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OPENSEQ.org
L19 - S06
UniProt: P60490 - Q5SLP8
Length: 247
Sequences: 1139
Seq/Len: 5.30
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dT 3v2eF 3v2fTContact Map
2j002j00F 2j01T 2j02F 2j03TContact Map
4juw4juwF 4juxTContact Map
4kix4kixP 4kiyF 4kizP 4kj0F 4kj1P 4kj2F 4kj3P 4kj4FContact Map
4kj54kj5P 4kj6F 4kj7P 4kj8F 4kj9P 4kjaF 4kjbP 4kjcFContact Map
3uyd3uydI 3uyeR 3uyfI 3uygRContact Map
4gd13r8sP 3r8tP 4gd1F 4gd2FContact Map
3knh3knhF 3kniT 3knjF 3knkTContact Map
3ohc3ohcF 3ohdF 3ohjT 3ohkTContact Map
3ohy3ohyF 3ohzT 3oi0F 3oi1TContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
88_I 49_A 0.93 0.01
51_R 73_N 0.91 0.01
39_R 93_S 0.85 0.01
84_Q 63_Y 0.80 0.01
65_K 57_Q 0.78 0.01
60_T 16_Q 0.74 0.01
86_I 36_R 0.74 0.01
53_R 41_E 0.73 0.01
39_R 95_E 0.73 0.01
61_F 44_G 0.71 0.01
42_I 20_A 0.70 0.01
48_I 84_N 0.70 0.01
51_R 19_L 0.69 0.01
33_K 3_R 0.69 0.01
110_I 74_D 0.69 0.01
34_V 61_L 0.69 0.01
98_K 64_Q 0.68 0.00
10_V 3_R 0.67 0.00
72_V 67_M 0.65 0.00
24_P 53_A 0.65 0.00
12_S 91_V 0.64 0.00
45_F 32_N 0.64 0.00
39_R 72_V 0.64 0.00
108_R 61_L 0.63 0.00
46_E 11_N 0.62 0.00
53_R 17_S 0.62 0.00
39_R 6_V 0.62 0.00
70_V 56_P 0.62 0.00
116_A 77_R 0.61 0.00
80_S 67_M 0.61 0.00
94_A 85_V 0.61 0.00
96_R 77_R 0.61 0.00
46_E 84_N 0.61 0.00
9_L 10_L 0.61 0.00
75_I 81_I 0.60 0.00
105_L 47_R 0.60 0.00
21_E 53_A 0.60 0.00
35_K 3_R 0.59 0.00
18_D 89_M 0.59 0.00
83_I 84_N 0.59 0.00
83_I 44_G 0.58 0.00
45_F 64_Q 0.58 0.00
65_K 82_R 0.58 0.00
77_P 81_I 0.58 0.00
18_D 28_R 0.58 0.00
75_I 64_Q 0.58 0.00
100_Y 86_R 0.58 0.00
19_L 29_A 0.57 0.00
21_E 34_G 0.57 0.00
111_R 16_Q 0.57 0.00
83_I 32_N 0.57 0.00
91_R 85_V 0.57 0.00
20_P 90_V 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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