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OPENSEQ.org
L19 - S16
UniProt: P60490 - Q5SJH3
Length: 234
Sequences: 1207
Seq/Len: 6.00
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2dT 3v2eP 3v2fTContact Map
2j002j00P 2j01T 2j02P 2j03TContact Map
4juw4juwP 4juxTContact Map
4kix4kixP 4kiyP 4kizP 4kj0P 4kj1P 4kj2P 4kj3P 4kj4PContact Map
4kj54kj5P 4kj6P 4kj7P 4kj8P 4kj9P 4kjaP 4kjbP 4kjcPContact Map
3uyd3uydS 3uyeR 3uyfS 3uygRContact Map
4gd13r8sP 3r8tP 4gd1P 4gd2PContact Map
3ohc3ohcP 3ohdP 3ohjT 3ohkTContact Map
3knh3knhP 3kniT 3knjP 3knkTContact Map
3f1e3f1eP 3f1fT 3f1gP 3f1hTContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
96_R 20_V 0.89 0.01
81_P 66_P 0.70 0.00
34_V 77_A 0.69 0.00
87_D 39_Y 0.69 0.00
11_E 62_V 0.67 0.00
78_L 60_L 0.66 0.00
82_L 7_A 0.66 0.00
10_V 11_S 0.65 0.00
82_L 27_K 0.65 0.00
113_K 86_E 0.63 0.00
51_R 5_R 0.63 0.00
78_L 77_A 0.62 0.00
36_E 74_L 0.61 0.00
85_K 62_V 0.60 0.00
96_R 54_E 0.60 0.00
61_F 59_W 0.59 0.00
52_I 60_L 0.57 0.00
22_F 59_W 0.56 0.00
13_R 67_T 0.55 0.00
96_R 46_P 0.54 0.00
75_I 51_V 0.54 0.00
90_Q 40_D 0.54 0.00
51_R 84_A 0.54 0.00
111_R 67_T 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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