May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L19 - L36
UniProt: P60490 - Q5SHR2
Length: 183
Sequences: 765
Seq/Len: 5.00
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dT9 3v2fT9Contact Map
2j002j01T9 2j03T9Contact Map
4juw4juxT9Contact Map
4kix4kixP4 4kizP4 4kj1P4 4kj3P4Contact Map
4kj54kj5P4 4kj7P4 4kj9P4 4kjbP4Contact Map
2zjr2zjrM4Contact Map
4btc4btdT9Contact Map
3v223v23T9 3v25T9Contact Map
4gd13r8sP4 3r8tP4Contact Map
3knh3kniT9 3knkT9Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
32_Y 24_Y 0.99 0.02
39_R 31_K 0.88 0.01
67_S 18_R 0.84 0.01
115_R 35_R 0.81 0.01
16_R 35_R 0.80 0.01
76_F 22_R 0.78 0.01
20_P 37_G 0.78 0.01
110_I 33_K 0.78 0.01
46_E 18_R 0.77 0.01
93_R 31_K 0.77 0.01
39_R 2_K 0.77 0.01
105_L 30_P 0.76 0.01
17_T 16_V 0.76 0.01
4_G 20_H 0.75 0.01
69_G 37_G 0.75 0.01
97_A 5_A 0.71 0.01
79_H 7_V 0.71 0.01
27_T 8_K 0.71 0.01
17_T 4_R 0.70 0.01
65_K 22_R 0.69 0.01
52_I 10_I 0.69 0.01
93_R 12_D 0.69 0.01
83_I 30_P 0.68 0.01
60_T 5_A 0.68 0.01
88_I 18_R 0.68 0.01
65_K 24_Y 0.67 0.01
84_Q 10_I 0.67 0.01
93_R 18_R 0.67 0.01
8_K 31_K 0.67 0.01
57_F 24_Y 0.66 0.01
96_R 29_N 0.66 0.01
39_R 22_R 0.66 0.01
34_V 29_N 0.66 0.01
4_G 13_K 0.66 0.01
51_R 35_R 0.65 0.01
14_Y 4_R 0.65 0.01
34_V 13_K 0.64 0.01
31_S 17_I 0.63 0.01
37_G 21_G 0.63 0.01
33_K 10_I 0.63 0.01
69_G 3_V 0.62 0.01
27_T 28_E 0.62 0.01
11_E 12_D 0.62 0.01
87_D 16_V 0.61 0.01
115_R 23_V 0.61 0.01
92_G 21_G 0.61 0.01
3_R 18_R 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4701 seconds.