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OPENSEQ.org
L16 - S06
UniProt: P60489 - Q5SLP8
Length: 242
Sequences: 1030
Seq/Len: 4.35
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dQ 3v2eF 3v2fQContact Map
2j002j00F 2j01Q 2j02F 2j03QContact Map
4juw4juwF 4juxQContact Map
4kix4kixM 4kiyF 4kizM 4kj0F 4kj1M 4kj2F 4kj3M 4kj4FContact Map
4kj54kj5M 4kj6F 4kj7M 4kj8F 4kj9M 4kjaF 4kjbM 4kjcFContact Map
3ohc3ohcF 3ohdF 3ohjQ 3ohkQContact Map
3knh3knhF 3kniQ 3knjF 3knkQContact Map
3uz63uz6I 3uz7I 3uz8P 3uz9PContact Map
3oge3ogeF 3ogyF 3oh5Q 3oh7QContact Map
3uyd3uydI 3uyeP 3uyfI 3uygPContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
23_G 89_M 0.97 0.01
44_A 7_N 0.80 0.01
101_R 43_L 0.79 0.01
110_T 36_R 0.78 0.01
32_Y 82_R 0.78 0.01
35_V 90_V 0.76 0.01
131_I 20_A 0.76 0.01
106_V 93_S 0.76 0.01
53_A 40_V 0.74 0.01
96_V 17_S 0.73 0.01
33_G 54_K 0.73 0.01
81_V 55_D 0.73 0.01
109_V 21_L 0.73 0.01
129_T 80_R 0.72 0.01
50_A 1_M 0.72 0.01
49_A 95_E 0.72 0.01
59_R 33_Y 0.71 0.01
42_I 36_R 0.71 0.01
42_I 28_R 0.71 0.01
35_V 54_K 0.70 0.01
34_L 16_Q 0.70 0.01
71_D 69_E 0.70 0.01
43_T 80_R 0.70 0.01
78_P 59_Y 0.70 0.01
102_V 93_S 0.70 0.01
73_P 41_E 0.70 0.01
73_P 18_Q 0.70 0.01
73_P 44_G 0.69 0.01
20_A 60_F 0.69 0.01
96_V 89_M 0.69 0.01
81_V 52_I 0.69 0.01
11_K 78_E 0.69 0.01
26_Y 70_D 0.68 0.01
5_R 90_V 0.67 0.01
20_A 88_V 0.66 0.01
25_D 48_L 0.66 0.01
137_Y 92_K 0.65 0.01
106_V 87_R 0.65 0.01
69_F 48_L 0.65 0.01
83_M 27_Q 0.65 0.01
54_M 42_E 0.65 0.01
59_R 85_V 0.64 0.01
133_R 91_V 0.64 0.01
59_R 2_R 0.64 0.01
67_R 54_K 0.64 0.01
45_Q 31_E 0.64 0.01
18_K 66_E 0.62 0.01
44_A 27_Q 0.62 0.01
110_T 91_V 0.62 0.01
96_V 88_V 0.62 0.01
63_K 2_R 0.62 0.01
63_K 47_R 0.62 0.01
115_M 67_M 0.62 0.01
89_N 51_P 0.62 0.01
129_T 72_V 0.62 0.01
43_T 46_R 0.61 0.01
79_L 28_R 0.61 0.01
103_M 70_D 0.61 0.01
132_V 34_G 0.61 0.00
137_Y 9_V 0.61 0.00
127_I 93_S 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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