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OPENSEQ.org
L13 - L15
UniProt: P60488 - Q5SHQ7
Length: 290
Sequences: 1488
Seq/Len: 5.26
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoJLOContact Map
1vq81vq8JLOContact Map
1vqp1vqpJLOContact Map
1vqm1vqmJLOContact Map
1vql1vqlJLOContact Map
1vqk1vqkJLOContact Map
1yhq1yhqJLOContact Map
1s721s72JLOContact Map
1vq91vq9JLOContact Map
1vqn1vqnJLOContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
109_K 16_R 1.04 0.04
82_L 129_A 0.88 0.03
111_P 4_S 0.87 0.02
63_T 95_V 0.77 0.02
82_L 113_K 0.74 0.02
72_Y 42_S 0.70 0.01
54_V 62_L 0.65 0.01
105_G 48_P 0.64 0.01
139_E 19_V 0.63 0.01
28_T 107_K 0.62 0.01
104_K 135_L 0.62 0.01
3_T 85_L 0.62 0.01
83_K 38_Q 0.62 0.01
8_Q 14_K 0.62 0.01
116_L 27_H 0.61 0.01
79_P 47_D 0.61 0.01
134_R 6_L 0.61 0.01
116_L 127_A 0.61 0.01
43_T 32_T 0.60 0.01
114_R 131_S 0.60 0.01
28_T 145_P 0.59 0.01
131_Q 98_E 0.58 0.01
122_V 68_Q 0.58 0.01
77_G 40_S 0.57 0.01
75_Y 33_R 0.57 0.01
127_D 7_R 0.57 0.01
140_V 13_N 0.56 0.01
55_V 50_R 0.56 0.01
42_W 121_K 0.56 0.01
119_R 56_S 0.56 0.01
116_L 60_M 0.55 0.01
63_T 10_P 0.55 0.01
2_K 49_R 0.55 0.01
134_R 139_K 0.54 0.01
72_Y 35_H 0.54 0.01
76_S 9_N 0.54 0.01
4_Y 137_K 0.54 0.01
16_I 40_S 0.54 0.01
9_V 116_G 0.53 0.01
102_A 129_A 0.53 0.01
93_T 85_L 0.53 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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