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OPENSEQ.org
L13 - L24
UniProt: P60488 - Q5SHP9
Length: 250
Sequences: 1399
Seq/Len: 5.78
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dNY 3v2fNYContact Map
2j002j01NY 2j03NYContact Map
4juw4juxNYContact Map
4kix4kixJU 4kizJU 4kj1JU 4kj3JUContact Map
4kj54kj5JU 4kj7JU 4kj9JU 4kjbJUContact Map
2zjr2zjrGRContact Map
4btc4btdNYContact Map
3uyd3uyeMU 3uygMUContact Map
4gd13r8sJU 3r8tJUContact Map
3knh3kniNY 3knkNYContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
105_G 40_E 0.84 0.00
131_Q 39_V 0.75 0.00
32_T 10_G 0.75 0.00
94_H 10_G 0.73 0.00
42_W 44_I 0.67 0.00
53_V 62_E 0.66 0.00
115_R 80_G 0.58 0.00
73_T 86_R 0.57 0.00
7_K 105_A 0.56 0.00
28_T 88_K 0.56 0.00
97_R 10_G 0.56 0.00
1_M 56_P 0.55 0.00
110_G 53_P 0.55 0.00
88_E 106_L 0.54 0.00
137_K 27_V 0.54 0.00
8_Q 65_A 0.53 0.00
80_G 51_V 0.52 0.00
38_H 56_P 0.52 0.00
129_P 9_K 0.52 0.00
129_P 103_G 0.51 0.00
60_I 54_K 0.51 0.00
35_R 50_R 0.51 0.00
40_P 66_P 0.51 0.00
8_Q 45_V 0.51 0.00
73_T 23_R 0.50 0.00
129_P 50_R 0.50 0.00
47_A 48_A 0.50 0.00
72_Y 51_V 0.49 0.00
98_V 14_L 0.49 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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