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OPENSEQ.org
L13 - S12
UniProt: P60488 - Q5SHN3
Length: 272
Sequences: 1156
Seq/Len: 4.36
I_Prob: 0.11
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2dN 3v2eL 3v2fNContact Map
2j002j00L 2j01N 2j02L 2j03NContact Map
4juw4juwL 4juxNContact Map
4kix4kixJ 4kiyL 4kizJ 4kj0L 4kj1J 4kj2L 4kj3J 4kj4LContact Map
4kj54kj5J 4kj6L 4kj7J 4kj8L 4kj9J 4kjaL 4kjbJ 4kjcLContact Map
3ohc3ohcL 3ohdL 3ohjN 3ohkNContact Map
3knh3knhL 3kniN 3knjL 3knkNContact Map
3uz63uz6O 3uz7O 3uz8M 3uz9MContact Map
3oge3ogeL 3ogyL 3oh5N 3oh7NContact Map
3uyd3uydO 3uyeM 3uyfO 3uygMContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
1_M 38_R 1.13 0.11
116_L 58_T 1.10 0.10
1_M 52_V 1.08 0.09
111_P 65_A 1.06 0.09
46_V 19_S 1.03 0.08
4_Y 30_R 0.94 0.06
7_K 101_V 0.89 0.05
137_K 82_I 0.88 0.05
85_I 20_K 0.87 0.05
83_K 5_N 0.84 0.04
40_P 112_K 0.83 0.04
6_P 16_R 0.83 0.04
4_Y 19_S 0.81 0.04
29_K 70_E 0.80 0.04
110_G 30_R 0.80 0.04
2_K 116_K 0.79 0.04
139_E 15_V 0.77 0.03
138_L 116_K 0.77 0.03
21_K 17_K 0.76 0.03
79_P 5_N 0.76 0.03
1_M 40_V 0.75 0.03
84_K 101_V 0.75 0.03
67_L 5_N 0.70 0.03
96_E 116_K 0.69 0.02
72_Y 116_K 0.68 0.02
103_V 116_K 0.68 0.02
139_E 14_K 0.67 0.02
87_L 70_E 0.67 0.02
86_P 56_R 0.67 0.02
21_K 58_T 0.66 0.02
100_E 112_K 0.66 0.02
42_W 24_L 0.66 0.02
42_W 124_E 0.65 0.02
140_V 16_R 0.65 0.02
102_A 120_K 0.65 0.02
41_D 79_V 0.65 0.02
140_V 61_Y 0.64 0.02
113_G 29_F 0.63 0.02
38_H 82_I 0.63 0.02
54_V 113_S 0.63 0.02
121_K 64_T 0.63 0.02
101_H 104_A 0.63 0.02
85_I 22_P 0.63 0.02
27_A 98_V 0.63 0.02
61_R 15_V 0.62 0.02
101_H 5_N 0.62 0.02
5_V 64_T 0.62 0.02
99_L 111_K 0.62 0.02
73_T 15_V 0.61 0.02
83_K 30_R 0.60 0.02
116_L 109_D 0.60 0.02
78_Y 98_V 0.60 0.02
47_A 102_Y 0.60 0.02
101_H 36_V 0.60 0.02
61_R 16_R 0.59 0.02
109_K 18_K 0.59 0.02
119_R 102_Y 0.59 0.01
138_L 79_V 0.59 0.01
139_E 82_I 0.59 0.01
35_R 120_K 0.58 0.01
78_Y 59_S 0.58 0.01
7_K 124_E 0.58 0.01
48_M 98_V 0.58 0.01
88_E 81_L 0.58 0.01
124_A 27_A 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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