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OPENSEQ.org
L13 - S11
UniProt: P60488 - P80376
Length: 269
Sequences: 1346
Seq/Len: 5.04
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2dN 3v2eK 3v2fNContact Map
2j002j00K 2j01N 2j02K 2j03NContact Map
4juw4juwK 4juxNContact Map
4kix4kixJ 4kiyK 4kizJ 4kj0K 4kj1J 4kj2K 4kj3J 4kj4KContact Map
4kj54kj5J 4kj6K 4kj7J 4kj8K 4kj9J 4kjaK 4kjbJ 4kjcKContact Map
3ohc3ohcK 3ohdK 3ohjN 3ohkNContact Map
3knh3knhK 3kniN 3knjK 3knkNContact Map
3uz63uz6N 3uz7N 3uz8M 3uz9MContact Map
3u5b3u5cO 3u5eO 3u5gO 3u5iOContact Map
3oge3ogeK 3ogyK 3oh5N 3oh7NContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_P 2_A 0.98 0.02
3_T 32_I 0.93 0.02
70_K 74_A 0.92 0.01
22_T 54_R 0.82 0.01
109_K 21_I 0.78 0.01
116_L 115_P 0.78 0.01
104_K 31_T 0.77 0.01
96_E 127_K 0.77 0.01
27_A 69_A 0.76 0.01
7_K 8_K 0.75 0.01
134_R 45_G 0.72 0.01
126_P 105_V 0.70 0.01
7_K 2_A 0.70 0.01
129_P 51_K 0.69 0.01
75_Y 74_A 0.68 0.01
93_T 105_V 0.68 0.01
15_L 68_A 0.68 0.01
53_V 83_I 0.67 0.01
53_V 25_Y 0.67 0.01
129_P 70_K 0.67 0.01
8_Q 11_K 0.67 0.01
41_D 19_A 0.67 0.01
103_V 67_D 0.65 0.01
57_A 41_T 0.63 0.01
21_K 89_A 0.63 0.01
1_M 83_I 0.63 0.01
76_S 63_L 0.62 0.01
88_E 2_A 0.62 0.01
138_L 93_Q 0.62 0.01
84_K 97_A 0.62 0.01
139_E 63_L 0.62 0.01
16_I 75_Y 0.62 0.01
21_K 31_T 0.61 0.01
2_K 59_Y 0.61 0.01
134_R 89_A 0.61 0.01
41_D 23_A 0.61 0.01
117_F 127_K 0.61 0.01
28_T 15_A 0.61 0.01
89_K 73_M 0.60 0.01
63_T 54_R 0.60 0.01
73_T 34_D 0.59 0.01
102_A 66_L 0.59 0.01
84_K 81_D 0.59 0.01
7_K 3_K 0.59 0.01
19_E 23_A 0.59 0.01
129_P 95_I 0.59 0.01
41_D 24_S 0.58 0.01
98_V 38_N 0.58 0.01
98_V 70_K 0.58 0.01
54_V 122_K 0.58 0.01
54_V 23_A 0.57 0.01
35_R 7_K 0.57 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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