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OPENSEQ.org
L02 - L04
UniProt: P60405 - Q5SHN9
Length: 486
Sequences: 1601
Seq/Len: 3.36
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoACContact Map
1vq81vq8ACContact Map
1vqp1vqpACContact Map
1vqm1vqmACContact Map
1vql1vqlACContact Map
1vqk1vqkACContact Map
1yhq1yhqACContact Map
1s721s72ACContact Map
1vq91vq9ACContact Map
1vqn1vqnACContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
176_R 166_A 0.90 0.00
2_A 9_I 0.86 0.00
142_V 10_P 0.75 0.00
225_A 112_M 0.73 0.00
147_L 193_V 0.73 0.00
268_R 157_V 0.73 0.00
149_P 65_W 0.72 0.00
127_V 148_L 0.71 0.00
12_S 115_A 0.70 0.00
165_I 103_K 0.67 0.00
267_S 90_F 0.67 0.00
10_T 52_K 0.66 0.00
156_A 83_F 0.66 0.00
115_Q 82_I 0.65 0.00
73_V 46_R 0.65 0.00
248_S 110_L 0.65 0.00
147_L 48_T 0.64 0.00
16_M 189_T 0.64 0.00
58_H 38_R 0.63 0.00
132_P 175_T 0.62 0.00
156_A 17_R 0.62 0.00
15_F 181_L 0.61 0.00
212_S 91_G 0.61 0.00
7_K 115_A 0.61 0.00
117_V 89_V 0.61 0.00
165_I 127_E 0.61 0.00
261_K 132_V 0.61 0.00
41_G 9_I 0.61 0.00
153_A 70_T 0.61 0.00
214_W 91_G 0.60 0.00
167_G 43_K 0.60 0.00
115_Q 182_N 0.59 0.00
267_S 190_E 0.59 0.00
138_V 198_A 0.59 0.00
237_E 68_K 0.59 0.00
167_G 108_K 0.59 0.00
154_K 69_H 0.59 0.00
54_R 93_K 0.59 0.00
65_I 56_E 0.58 0.00
269_F 191_R 0.58 0.00
272_A 59_Y 0.58 0.00
173_V 43_K 0.58 0.00
10_T 46_R 0.58 0.00
54_R 50_S 0.58 0.00
15_F 65_W 0.58 0.00
258_K 194_M 0.57 0.00
147_L 85_G 0.57 0.00
79_V 20_L 0.57 0.00
148_E 181_L 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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