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OPENSEQ.org

L02 - L28
UniProt: P60405 - P60494
Length: 374
Sequences: 897
Seq/Len: 2.65
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dD1 3v2fD1Contact Map
2j002j01D1 2j03D1Contact Map
4juw4juxD1Contact Map
4kix4kixCX 4kizCX 4kj1CX 4kj3CXContact Map
4kj54kj5CX 4kj7CX 4kj9CX 4kjbCXContact Map
2zjr2zjrAUContact Map
4btc4btdD1Contact Map
3uyd3uyeDZ 3uygDZContact Map
4gd13r8sCX 3r8tCXContact Map
3ohc3ohjD1 3ohkD1Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
272_A 39_K 1.08 0.01
224_A 37_I 0.99 0.01
168_R 66_H 0.90 0.01
48_R 44_P 0.84 0.01
117_V 44_P 0.84 0.01
60_R 67_I 0.81 0.01
11_P 37_I 0.74 0.01
68_K 59_T 0.71 0.01
163_A 64_A 0.71 0.01
68_K 40_R 0.70 0.00
275_K 64_A 0.69 0.00
133_L 59_T 0.67 0.00
3_V 67_I 0.67 0.00
190_Y 62_V 0.66 0.00
261_K 2_S 0.65 0.00
154_K 36_G 0.65 0.00
176_R 49_V 0.64 0.00
225_A 74_V 0.63 0.00
267_S 71_Y 0.63 0.00
106_I 9_G 0.63 0.00
134_R 4_V 0.63 0.00
172_Y 59_T 0.63 0.00
255_K 42_Q 0.62 0.00
2_A 44_P 0.62 0.00
271_I 42_Q 0.62 0.00
162_S 7_I 0.62 0.00
258_K 6_E 0.61 0.00
182_L 21_R 0.60 0.00
172_Y 20_R 0.60 0.00
131_L 34_T 0.60 0.00
117_V 17_S 0.59 0.00
9_Y 40_R 0.58 0.00
178_P 63_A 0.58 0.00
252_W 2_S 0.57 0.00
184_K 62_V 0.57 0.00
116_Q 62_V 0.57 0.00
41_G 2_S 0.57 0.00
3_V 44_P 0.57 0.00
81_A 51_V 0.56 0.00
78_K 55_G 0.56 0.00
95_L 59_T 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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