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OPENSEQ.org

L33 - S18
UniProt: P35871 - Q5SLQ0
Length: 142
Sequences: 904
Seq/Len: 7.47
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cR 3v2d6 3v2eR 3v2f6Contact Map
2j002j00R 2j016 2j02R 2j036Contact Map
3uyd3uydU 3uye6 3uyfU 3uyg6Contact Map
3ohc3ohcR 3ohdR 3ohj6 3ohk6Contact Map
3knh3knhR 3kni6 3knjR 3knk6Contact Map
3ohy3ohyR 3ohz6 3oi0R 3oi16Contact Map
3f1e3f1eR 3f1f6 3f1gR 3f1h6Contact Map
3v223v22R 3v236 3v24R 3v256Contact Map
3uz63uz6U 3uz7U 3uz86 3uz96Contact Map
3oge3ogeR 3ogyR 3oh56 3oh76Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
31_P 69_T 0.86 0.01
15_E 40_L 0.75 0.00
14_T 64_R 0.72 0.00
45_K 21_K 0.70 0.00
24_E 28_E 0.68 0.00
23_T 56_T 0.66 0.00
37_R 48_G 0.65 0.00
49_H 59_S 0.64 0.00
33_K 23_K 0.63 0.00
31_P 80_P 0.62 0.00
54_I 51_L 0.62 0.00
9_L 26_L 0.61 0.00
22_A 52_P 0.60 0.00
24_E 66_L 0.60 0.00
30_T 39_V 0.58 0.00
39_Y 73_A 0.58 0.00
53_K 61_K 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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