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OPENSEQ.org
L33 - S08
UniProt: P35871 - Q5SHQ2
Length: 192
Sequences: 1178
Seq/Len: 6.44
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2d6 3v2eH 3v2f6Contact Map
2j002j00H 2j016 2j02H 2j036Contact Map
4juw4juwH 4jux6Contact Map
4kix4kix1 4kiyH 4kiz1 4kj0H 4kj11 4kj2H 4kj31 4kj4HContact Map
4kj54kj51 4kj6H 4kj71 4kj8H 4kj91 4kjaH 4kjb1 4kjcHContact Map
3uyd3uydK 3uye6 3uyfK 3uyg6Contact Map
4gd13r8s1 3r8t1 4gd1H 4gd2HContact Map
3knh3knhH 3kni6 3knjH 3knk6Contact Map
3ohc3ohcH 3ohdH 3ohj6 3ohk6Contact Map
3ohy3ohyH 3ohz6 3oi0H 3oi16Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
5_V 109_I 0.95 0.01
27_K 13_I 0.77 0.01
37_R 61_V 0.76 0.01
50_R 41_R 0.74 0.01
28_R 21_K 0.72 0.01
33_K 104_R 0.72 0.01
29_N 55_G 0.71 0.01
7_I 135_C 0.71 0.01
17_K 44_F 0.70 0.01
27_K 50_R 0.70 0.01
30_T 115_S 0.70 0.01
41_P 133_L 0.69 0.01
27_K 76_P 0.69 0.01
22_A 67_P 0.68 0.01
6_R 122_R 0.68 0.01
52_V 11_T 0.66 0.01
53_K 45_I 0.64 0.01
45_K 81_H 0.63 0.01
9_L 115_S 0.62 0.01
32_N 83_I 0.62 0.01
11_L 90_G 0.62 0.01
29_N 23_S 0.62 0.01
29_N 115_S 0.62 0.01
19_R 32_K 0.62 0.01
40_C 42_E 0.62 0.01
8_K 40_A 0.61 0.01
50_R 53_V 0.61 0.01
28_R 76_P 0.61 0.01
26_N 115_S 0.61 0.01
52_V 6_I 0.60 0.01
52_V 105_R 0.60 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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