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OPENSEQ.org

PANB - PAND
UniProt: P31057 - P0A790
Length: 390
Sequences: 259
Seq/Len: 0.67
I_Prob: 0.00

PANB - 3-methyl-2-oxobutanoate hydroxymethyltransferase
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PANB
PAND - Aspartate 1-decarboxylase
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PAND
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
199_V 108_F 1.34 0.00
131_V 97_E 1.32 0.00
182_C 37_G 1.30 0.00
131_V 89_S 1.29 0.00
260_E 34_D 1.24 0.00
170_L 48_N 1.20 0.00
88_M 63_E 1.10 0.00
88_M 89_S 1.09 0.00
106_A 81_V 1.08 0.00
144_V 95_D 1.06 0.00
163_L 10_L 1.04 0.00
15_E 33_L 1.03 0.00
73_R 91_V 1.03 0.00
180_L 42_E 1.02 0.00
241_R 46_I 1.02 0.00
263_F 91_V 1.02 0.00
116_G 8_G 1.01 0.00
182_C 51_N 1.00 0.00
52_Q 90_F 1.00 0.00
228_K 18_A 1.00 0.00
183_V 5_M 0.98 0.00
187_L 102_R 0.97 0.00
5_T 38_I 0.97 0.00
58_L 55_F 0.95 0.00
100_A 38_I 0.92 0.00
227_P 37_G 0.92 0.00
234_L 27_A 0.91 0.00
87_F 18_A 0.90 0.00
170_L 33_L 0.89 0.00
254_G 55_F 0.89 0.00
134_C 122_P 0.89 0.00
195_L 31_D 0.89 0.00
24_A 96_E 0.89 0.00
56_S 45_D 0.88 0.00
32_L 106_A 0.87 0.00
85_L 84_I 0.87 0.00
19_F 50_T 0.87 0.00
102_T 42_E 0.87 0.00
116_G 32_F 0.87 0.00
32_L 10_L 0.86 0.00
240_I 45_D 0.86 0.00
21_T 77_H 0.85 0.00
152_V 37_G 0.85 0.00
63_A 110_G 0.85 0.00
95_Q 46_I 0.85 0.00
81_L 97_E 0.84 0.00
50_T 61_A 0.84 0.00
171_E 90_F 0.84 0.00
124_Q 102_R 0.84 0.00
18_R 99_R 0.83 0.00
261_H 20_L 0.83 0.00
123_V 23_E 0.82 0.00
88_M 64_R 0.82 0.00
61_T 18_A 0.82 0.00
81_L 111_D 0.82 0.00
195_L 89_S 0.81 0.00
38_L 39_L 0.81 0.00
85_L 113_E 0.81 0.00
103_V 19_D 0.81 0.00
218_A 89_S 0.81 0.00
48_G 38_I 0.80 0.00
82_L 12_R 0.80 0.00
89_A 38_I 0.80 0.00
28_S 41_N 0.80 0.00
126_L 48_N 0.80 0.00
192_T 8_G 0.80 0.00
56_S 41_N 0.79 0.00
106_A 3_R 0.79 0.00
43_V 8_G 0.79 0.00
13_K 13_V 0.79 0.00
11_K 102_R 0.79 0.00
89_A 50_T 0.79 0.00
230_A 44_I 0.79 0.00
109_N 105_V 0.78 0.00
176_Q 44_I 0.77 0.00
123_V 8_G 0.77 0.00
258_G 33_L 0.77 0.00
155_R 110_G 0.77 0.00
259_E 33_L 0.76 0.00
233_F 19_D 0.76 0.00
116_G 36_A 0.76 0.00
14_Q 34_D 0.76 0.00
256_Y 85_V 0.76 0.00
145_N 7_Q 0.75 0.00
33_F 41_N 0.75 0.00
163_L 21_H 0.75 0.00
60_V 112_N 0.75 0.00
237_T 123_V 0.75 0.00
170_L 123_V 0.74 0.00
239_D 46_I 0.74 0.00
232_N 44_I 0.74 0.00
145_N 118_A 0.74 0.00
110_M 27_A 0.74 0.00
185_V 94_P 0.73 0.00
187_L 55_F 0.73 0.00
82_L 79_A 0.73 0.00
105_R 3_R 0.73 0.00
79_C 109_E 0.73 0.00
226_I 34_D 0.73 0.00
212_I 108_F 0.73 0.00
56_S 100_T 0.73 0.00
199_V 109_E 0.73 0.00
209_D 15_V 0.73 0.00
31_K 43_A 0.72 0.00
131_V 13_V 0.72 0.00
168_L 102_R 0.72 0.00
126_L 47_W 0.72 0.00
97_F 91_V 0.72 0.00
263_F 45_D 0.72 0.00
5_T 98_A 0.72 0.00
103_V 105_V 0.72 0.00
232_N 26_C 0.71 0.00
75_G 71_V 0.71 0.00
96_A 6_L 0.71 0.00
28_S 6_L 0.71 0.00
232_N 27_A 0.71 0.00
32_L 116_R 0.71 0.00
37_G 32_F 0.71 0.00
150_Y 48_N 0.71 0.00
11_K 108_F 0.71 0.00
164_L 37_G 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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