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OPENSEQ.org

HOLA - PABC
UniProt: P28630 - P28305
Length: 612
Sequences: 355
Seq/Len: 0.60
I_Prob: 0.00

HOLA - DNA polymerase III subunit delta
Paralog alert: 0.85 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: HOLA
PABC - Aminodeoxychorismate lyase
Paralog alert: 0.66 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: ILVE PABC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
75_A 123_L 1.19 0.00
43_A 133_N 1.15 0.00
150_W 90_R 1.14 0.00
155_A 205_C 1.12 0.00
177_N 171_V 1.09 0.00
55_I 235_C 1.09 0.00
78_Q 39_L 1.04 0.00
42_A 213_S 1.04 0.00
86_E 205_C 1.04 0.00
114_G 56_S 1.04 0.00
327_L 121_I 1.03 0.00
76_S 197_V 1.01 0.00
150_W 17_R 1.01 0.00
164_D 171_V 1.01 0.00
159_N 166_D 0.99 0.00
93_I 53_L 0.99 0.00
68_C 200_I 0.99 0.00
18_R 240_P 0.99 0.00
182_A 227_L 0.98 0.00
111_I 70_L 0.98 0.00
294_S 249_D 0.98 0.00
106_D 234_I 0.97 0.00
287_G 118_N 0.97 0.00
178_L 196_G 0.96 0.00
177_N 172_T 0.95 0.00
72_S 244_V 0.95 0.00
29_L 123_L 0.95 0.00
106_D 205_C 0.94 0.00
165_A 205_C 0.94 0.00
262_R 241_V 0.94 0.00
106_D 206_I 0.93 0.00
105_H 259_E 0.93 0.00
16_G 3_L 0.93 0.00
164_D 56_S 0.93 0.00
61_W 235_C 0.93 0.00
78_Q 58_D 0.92 0.00
328_S 226_S 0.92 0.00
111_I 191_R 0.91 0.00
150_W 145_L 0.91 0.00
9_L 212_S 0.91 0.00
111_I 260_Y 0.91 0.00
73_L 197_V 0.90 0.00
328_S 143_N 0.90 0.00
238_L 212_S 0.90 0.00
89_P 171_V 0.89 0.00
288_E 171_V 0.89 0.00
82_L 216_L 0.89 0.00
288_E 48_D 0.89 0.00
38_V 122_T 0.89 0.00
202_V 241_V 0.89 0.00
38_V 87_S 0.88 0.00
97_L 6_G 0.87 0.00
288_E 235_C 0.87 0.00
242_E 70_L 0.87 0.00
303_Q 38_L 0.87 0.00
322_A 163_L 0.86 0.00
184_A 161_E 0.86 0.00
178_L 146_E 0.86 0.00
142_P 141_H 0.85 0.00
73_L 89_G 0.85 0.00
316_Y 171_V 0.85 0.00
92_A 89_G 0.84 0.00
323_E 12_L 0.84 0.00
19_A 19_T 0.84 0.00
181_L 22_G 0.84 0.00
305_L 214_Y 0.84 0.00
27_D 167_S 0.84 0.00
143_E 87_S 0.84 0.00
35_Q 36_V 0.84 0.00
238_L 121_I 0.84 0.00
38_V 258_Y 0.84 0.00
130_L 29_A 0.83 0.00
59_T 148_V 0.83 0.00
277_R 201_M 0.83 0.00
309_E 235_C 0.83 0.00
44_A 91_G 0.83 0.00
224_G 36_V 0.83 0.00
55_I 151_R 0.83 0.00
55_I 58_D 0.83 0.00
23_L 33_D 0.82 0.00
127_F 173_E 0.82 0.00
85_P 206_I 0.82 0.00
212_F 12_L 0.82 0.00
247_L 36_V 0.82 0.00
305_L 79_L 0.82 0.00
211_H 244_V 0.82 0.00
34_S 196_G 0.82 0.00
286_M 205_C 0.82 0.00
128_T 193_D 0.82 0.00
38_V 21_F 0.82 0.00
201_R 46_L 0.81 0.00
42_A 244_V 0.81 0.00
63_A 67_M 0.81 0.00
72_S 197_V 0.80 0.00
90_N 254_S 0.80 0.00
173_C 257_L 0.80 0.00
182_A 4_I 0.80 0.00
171_C 235_C 0.80 0.00
135_V 175_C 0.80 0.00
301_A 1_M 0.80 0.00
259_N 27_T 0.80 0.00
153_A 67_M 0.80 0.00
214_P 173_E 0.80 0.00
172_Y 50_C 0.80 0.00
79_T 227_L 0.80 0.00
306_T 50_C 0.79 0.00
6_P 3_L 0.79 0.00
154_R 152_S 0.79 0.00
35_Q 262_A 0.79 0.00
290_L 237_A 0.79 0.00
150_W 85_R 0.79 0.00
98_L 92_Y 0.79 0.00
13_L 19_T 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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