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OPENSEQ.org

SYC - TRML
UniProt: P21888 - P0AGJ7
Length: 618
Sequences: 647
Seq/Len: 1.07
I_Prob: 0.01

SYC - Cysteine--tRNA ligase
Paralog alert: 0.50 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: SYC
TRML - tRNA (cytidine(34)-2'-O)-methyltransferase
Paralog alert: 0.90 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: RLMB TRML
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
430_K 19_I 1.40 0.01
130_A 75_L 1.14 0.00
258_G 3_N 1.04 0.00
21_G 98_M 1.04 0.00
393_L 80_T 1.03 0.00
92_M 97_L 1.01 0.00
372_E 90_S 1.01 0.00
294_M 122_I 0.99 0.00
432_W 55_T 0.97 0.00
125_T 63_Y 0.97 0.00
2_L 118_Q 0.95 0.00
164_Q 134_S 0.94 0.00
361_D 37_F 0.93 0.00
195_P 47_A 0.89 0.00
101_D 28_R 0.88 0.00
87_A 8_E 0.88 0.00
18_I 3_N 0.88 0.00
40_H 140_V 0.86 0.00
292_F 4_I 0.85 0.00
435_A 107_P 0.84 0.00
356_Y 141_V 0.83 0.00
255_M 31_I 0.82 0.00
70_I 45_R 0.81 0.00
195_P 5_V 0.81 0.00
125_T 51_Y 0.81 0.00
453_P 81_K 0.81 0.00
30_I 31_I 0.81 0.00
414_A 36_G 0.81 0.00
432_W 69_A 0.80 0.00
303_N 17_N 0.79 0.00
421_Q 139_V 0.79 0.00
304_Y 91_Y 0.79 0.00
393_L 111_L 0.79 0.00
425_D 92_Q 0.78 0.00
213_N 106_L 0.78 0.00
160_L 18_I 0.78 0.00
247_D 82_G 0.77 0.00
119_A 97_L 0.77 0.00
220_H 46_R 0.76 0.00
9_T 69_A 0.76 0.00
293_L 122_I 0.75 0.00
323_L 139_V 0.75 0.00
156_S 26_G 0.75 0.00
393_L 79_T 0.74 0.00
252_N 106_L 0.74 0.00
302_L 9_P 0.74 0.00
279_D 142_Y 0.74 0.00
429_A 94_G 0.74 0.00
351_N 71_N 0.74 0.00
125_T 144_A 0.73 0.00
5_F 10_E 0.73 0.00
159_D 138_S 0.73 0.00
172_V 63_Y 0.73 0.00
449_L 106_L 0.73 0.00
251_V 106_L 0.72 0.00
352_T 95_D 0.72 0.00
70_I 52_H 0.72 0.00
454_Q 17_N 0.72 0.00
166_G 124_M 0.72 0.00
59_Y 92_Q 0.72 0.00
40_H 73_Q 0.72 0.00
5_F 133_L 0.72 0.00
63_Y 68_E 0.71 0.00
438_A 59_R 0.71 0.00
262_V 120_I 0.71 0.00
59_Y 126_P 0.71 0.00
389_A 112_D 0.71 0.00
284_Y 122_I 0.71 0.00
11_Q 68_E 0.71 0.00
105_I 46_R 0.70 0.00
157_R 106_L 0.70 0.00
352_T 104_R 0.70 0.00
4_I 88_A 0.70 0.00
390_V 120_I 0.69 0.00
225_G 34_P 0.69 0.00
40_H 78_L 0.69 0.00
123_E 95_D 0.69 0.00
125_T 110_I 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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