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OPENSEQ.org

RNH2 - TRMD
UniProt: P10442 - P0A873
Length: 453
Sequences: 421
Seq/Len: 0.98
I_Prob: 0.00

RNH2 - Ribonuclease HII
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNH2
TRMD - tRNA (guanine-N(1)-)-methyltransferase
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TRMD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
43_L 109_I 1.14 0.00
158_G 109_I 1.13 0.00
174_L 108_L 1.12 0.00
174_L 173_E 1.10 0.00
109_G 114_R 1.09 0.00
174_L 219_R 1.04 0.00
32_V 171_F 1.02 0.00
158_G 160_L 0.99 0.00
35_D 147_T 0.97 0.00
95_V 41_F 0.95 0.00
73_A 148_L 0.93 0.00
189_P 114_R 0.92 0.00
175_A 97_A 0.90 0.00
105_V 7_S 0.88 0.00
81_L 147_T 0.88 0.00
103_E 137_V 0.87 0.00
87_T 187_L 0.87 0.00
172_E 103_A 0.87 0.00
119_A 7_S 0.86 0.00
32_V 129_E 0.86 0.00
12_V 133_I 0.85 0.00
22_P 38_P 0.84 0.00
18_V 171_F 0.83 0.00
151_D 6_I 0.83 0.00
132_I 181_Y 0.83 0.00
168_A 42_T 0.82 0.00
93_R 87_L 0.82 0.00
122_V 183_R 0.82 0.00
32_V 169_D 0.82 0.00
104_Y 7_S 0.82 0.00
91_M 169_D 0.82 0.00
138_L 22_T 0.81 0.00
150_L 38_P 0.81 0.00
18_V 11_E 0.81 0.00
87_T 86_Y 0.81 0.00
166_P 3_I 0.81 0.00
11_L 230_T 0.81 0.00
51_E 6_I 0.80 0.00
12_V 144_P 0.80 0.00
18_V 23_G 0.79 0.00
55_L 156_I 0.78 0.00
175_A 136_Y 0.78 0.00
147_M 177_D 0.78 0.00
180_T 214_G 0.78 0.00
56_A 92_R 0.77 0.00
73_A 110_L 0.77 0.00
167_T 194_P 0.77 0.00
137_I 37_S 0.76 0.00
131_E 120_E 0.76 0.00
22_P 114_R 0.76 0.00
116_P 32_S 0.76 0.00
186_S 238_A 0.76 0.00
22_P 8_L 0.75 0.00
190_V 114_R 0.75 0.00
50_S 27_K 0.75 0.00
173_K 149_I 0.74 0.00
41_A 144_P 0.74 0.00
114_K 27_K 0.73 0.00
177_H 29_G 0.73 0.00
30_A 222_E 0.73 0.00
12_V 101_E 0.73 0.00
179_A 129_E 0.73 0.00
81_L 118_I 0.72 0.00
97_G 29_G 0.72 0.00
30_A 8_L 0.72 0.00
177_H 35_S 0.72 0.00
87_T 111_V 0.72 0.00
51_E 103_A 0.71 0.00
172_E 194_P 0.71 0.00
13_A 4_G 0.71 0.00
53_R 47_R 0.71 0.00
33_I 202_A 0.71 0.00
123_V 47_R 0.71 0.00
104_Y 200_N 0.71 0.00
115_L 136_Y 0.71 0.00
116_P 42_T 0.71 0.00
167_T 27_K 0.71 0.00
84_L 86_Y 0.71 0.00
145_A 191_E 0.70 0.00
141_V 140_G 0.70 0.00
154_F 185_E 0.70 0.00
161_Q 74_A 0.70 0.00
130_P 47_R 0.70 0.00
29_T 128_D 0.70 0.00
169_F 162_H 0.70 0.00
123_V 11_E 0.70 0.00
148_A 152_V 0.70 0.00
141_V 54_Y 0.69 0.00
109_G 16_I 0.69 0.00
186_S 109_I 0.69 0.00
58_Y 7_S 0.69 0.00
120_M 136_Y 0.69 0.00
18_V 3_I 0.69 0.00
51_E 165_S 0.68 0.00
86_A 145_A 0.68 0.00
173_K 147_T 0.68 0.00
78_I 82_A 0.68 0.00
29_T 180_H 0.68 0.00
82_N 90_Q 0.67 0.00
98_L 169_D 0.67 0.00
24_V 222_E 0.67 0.00
166_P 233_Q 0.67 0.00
166_P 180_H 0.67 0.00
150_L 230_T 0.67 0.00
56_A 87_L 0.67 0.00
146_E 31_L 0.66 0.00
98_L 108_L 0.66 0.00
43_L 190_M 0.66 0.00
69_S 82_A 0.66 0.00
69_S 6_I 0.66 0.00
187_F 139_S 0.66 0.00
95_V 73_A 0.66 0.00
138_L 84_V 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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