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OPENSEQ.org

RIBF - RNPH
UniProt: P0AG40 - P0CG19
Length: 541
Sequences: 353
Seq/Len: 0.68
I_Prob: 0.00

RIBF - Riboflavin biosynthesis protein RibF
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RIBF
RNPH - Inactive ribonuclease PH
Paralog alert: 0.69 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: RNPH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
105_Q 68_R 1.48 0.00
207_F 48_P 1.38 0.00
163_R 130_I 1.35 0.00
242_N 138_V 1.31 0.00
234_E 106_A 1.26 0.00
102_L 7_S 1.25 0.00
129_F 137_L 1.22 0.00
36_L 102_V 1.17 0.00
112_L 94_I 1.14 0.00
259_H 21_T 1.13 0.00
250_A 224_E 1.12 0.00
136_D 38_L 1.11 0.00
294_A 99_R 1.11 0.00
219_S 222_R 1.10 0.00
265_M 24_A 1.09 0.00
243_I 10_Q 1.09 0.00
41_E 68_R 1.08 0.00
259_H 8_N 1.06 0.00
187_H 197_I 1.05 0.00
59_P 220_L 1.04 0.00
182_E 197_I 1.04 0.00
276_L 73_R 1.03 0.00
210_A 163_S 1.02 0.00
73_T 68_R 1.01 0.00
90_V 194_D 1.01 0.00
116_L 101_A 1.00 0.00
135_G 133_A 1.00 0.00
127_F 170_E 0.99 0.00
28_V 38_L 0.98 0.00
90_V 219_A 0.98 0.00
203_R 38_L 0.98 0.00
154_T 60_T 0.98 0.00
57_P 200_V 0.97 0.00
152_T 60_T 0.96 0.00
144_G 173_C 0.96 0.00
59_P 72_T 0.95 0.00
127_F 21_T 0.95 0.00
278_K 74_N 0.95 0.00
78_K 55_G 0.95 0.00
39_L 170_E 0.94 0.00
221_V 209_F 0.94 0.00
127_F 169_G 0.94 0.00
111_L 94_I 0.94 0.00
178_L 40_T 0.93 0.00
126_D 27_S 0.93 0.00
277_R 70_T 0.92 0.00
279_K 130_I 0.92 0.00
293_K 136_A 0.92 0.00
250_A 62_E 0.92 0.00
291_E 68_R 0.91 0.00
20_L 100_A 0.91 0.00
142_K 137_L 0.91 0.00
28_V 218_L 0.91 0.00
47_N 56_Q 0.91 0.00
245_T 67_P 0.90 0.00
54_L 125_T 0.90 0.00
102_L 200_V 0.90 0.00
283_E 62_E 0.90 0.00
133_R 61_A 0.90 0.00
57_P 29_L 0.90 0.00
210_A 214_L 0.89 0.00
153_S 55_G 0.89 0.00
114_K 18_R 0.89 0.00
30_R 169_G 0.89 0.00
126_D 132_G 0.89 0.00
28_V 9_N 0.89 0.00
226_A 207_E 0.89 0.00
107_F 44_E 0.88 0.00
93_V 68_R 0.88 0.00
174_A 128_A 0.87 0.00
243_I 24_A 0.87 0.00
191_I 29_L 0.87 0.00
306_F 130_I 0.86 0.00
227_V 111_T 0.86 0.00
102_L 168_N 0.86 0.00
35_L 21_T 0.85 0.00
205_I 10_Q 0.85 0.00
200_E 209_F 0.85 0.00
18_C 222_R 0.85 0.00
227_V 120_Q 0.85 0.00
30_R 76_R 0.85 0.00
99_F 99_R 0.85 0.00
175_D 222_R 0.84 0.00
136_D 15_T 0.84 0.00
246_R 138_V 0.84 0.00
201_L 200_V 0.84 0.00
97_R 127_T 0.84 0.00
133_R 204_A 0.84 0.00
102_L 68_R 0.84 0.00
126_D 158_M 0.84 0.00
204_T 10_Q 0.84 0.00
249_V 214_L 0.84 0.00
114_K 94_I 0.83 0.00
300_E 210_T 0.83 0.00
144_G 170_E 0.83 0.00
79_L 55_G 0.83 0.00
246_R 136_A 0.83 0.00
205_I 20_Y 0.83 0.00
106_N 136_A 0.82 0.00
21_T 132_G 0.82 0.00
249_V 218_L 0.82 0.00
242_N 45_E 0.82 0.00
191_I 82_K 0.82 0.00
196_V 60_T 0.82 0.00
201_L 181_S 0.82 0.00
164_I 223_G 0.82 0.00
246_R 117_D 0.82 0.00
308_G 106_A 0.82 0.00
136_D 158_M 0.81 0.00
274_V 44_E 0.81 0.00
21_T 28_V 0.81 0.00
280_I 193_E 0.81 0.00
102_L 136_A 0.81 0.00
295_Q 1_M 0.81 0.00
210_A 164_V 0.81 0.00
54_L 72_T 0.80 0.00
212_V 170_E 0.80 0.00
22_I 34_D 0.80 0.00
287_A 14_V 0.80 0.00
135_G 83_Q 0.80 0.00
285_R 136_A 0.80 0.00
151_I 173_C 0.80 0.00
133_R 34_D 0.80 0.00
65_T 46_G 0.80 0.00
251_G 182_A 0.80 0.00
127_F 17_T 0.79 0.00
128_R 173_C 0.79 0.00
274_V 162_V 0.79 0.00
58_Q 119_L 0.79 0.00
24_N 8_N 0.79 0.00
93_V 212_E 0.78 0.00
148_G 94_I 0.78 0.00
293_K 19_N 0.78 0.00
156_T 209_F 0.78 0.00
207_F 38_L 0.78 0.00
161_G 216_I 0.78 0.00
77_E 135_V 0.78 0.00
133_R 133_A 0.78 0.00
83_A 62_E 0.77 0.00
116_L 197_I 0.77 0.00
100_A 120_Q 0.77 0.00
28_V 214_L 0.77 0.00
135_G 23_H 0.77 0.00
213_P 167_V 0.77 0.00
233_G 40_T 0.77 0.00
168_A 167_V 0.77 0.00
39_L 200_V 0.77 0.00
138_L 18_R 0.77 0.00
33_R 57_G 0.77 0.00
260_L 167_V 0.76 0.00
251_G 160_A 0.76 0.00
86_G 130_I 0.76 0.00
173_L 21_T 0.76 0.00
148_G 130_I 0.76 0.00
88_D 102_V 0.76 0.00
119_K 48_P 0.76 0.00
98_R 73_R 0.76 0.00
286_F 17_T 0.76 0.00
187_H 76_R 0.76 0.00
163_R 94_I 0.76 0.00
24_N 169_G 0.76 0.00
245_T 70_T 0.76 0.00
20_L 136_A 0.76 0.00
74_R 98_L 0.76 0.00
249_V 163_S 0.76 0.00
263_V 13_P 0.76 0.00
203_R 74_N 0.75 0.00
242_N 75_A 0.75 0.00
48_L 162_V 0.75 0.00
291_E 135_V 0.75 0.00
51_M 226_N 0.75 0.00
283_E 138_V 0.75 0.00
266_D 3_P 0.75 0.00
50_V 210_T 0.75 0.00
65_T 24_A 0.75 0.00
58_Q 163_S 0.75 0.00
178_L 132_G 0.75 0.00
127_F 132_G 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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