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OPENSEQ.org
NUOE - NUOF
UniProt: P0AFD1 - P31979
Length: 611
Sequences: 1030
Seq/Len: 1.80
I_Prob: 0.31
NUOE - NADH-quinone oxidoreductase subunit E
Paralog alert: 0.19 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOE 		NUOF - NADH-quinone oxidoreductase subunit F
Paralog alert: 0.48 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3i9v1A:2BContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
135_G 136_Y 1.49 0.31
138_D 99_Y 1.36 0.22
71_G 194_R 1.12 0.11
68_D 193_R 1.09 0.10
103_Q 337_S 1.03 0.08
29_Y 172_H 0.99 0.07
34_A 210_W 0.97 0.07
136_N 320_R 0.97 0.06
95_V 342_L 0.91 0.05
132_C 348_R 0.90 0.05
100_N 282_R 0.89 0.05
71_G 188_N 0.88 0.04
98_H 172_H 0.86 0.04
161_L 266_F 0.82 0.04
94_S 341_N 0.82 0.04
105_I 125_A 0.80 0.03
37_I 175_A 0.79 0.03
121_T 265_P 0.78 0.03
78_Q 134_G 0.78 0.03
75_F 177_R 0.77 0.03
131_T 115_G 0.76 0.03
138_D 103_L 0.76 0.03
132_C 346_F 0.75 0.03
68_D 276_D 0.75 0.03
134_L 200_K 0.75 0.03
95_V 419_F 0.75 0.03
48_G 194_R 0.75 0.03
135_G 167_F 0.74 0.03
90_R 66_G 0.74 0.03
74_T 224_N 0.74 0.03
99_I 329_V 0.74 0.03
131_T 173_T 0.74 0.03
94_S 98_T 0.73 0.02
132_C 292_P 0.73 0.02
79_I 177_R 0.73 0.02
26_M 77_P 0.73 0.02
136_N 99_Y 0.73 0.02
114_N 229_L 0.72 0.02
94_S 295_A 0.72 0.02
74_T 257_K 0.72 0.02
135_G 132_L 0.72 0.02
72_V 163_T 0.72 0.02
153_L 173_T 0.71 0.02
105_I 272_E 0.70 0.02
50_V 121_F 0.70 0.02
71_G 387_L 0.70 0.02
93_D 341_N 0.70 0.02
30_E 262_W 0.69 0.02
136_N 70_G 0.69 0.02
160_E 234_E 0.68 0.02
151_A 102_R 0.68 0.02
153_L 389_R 0.67 0.02
160_E 42_L 0.67 0.02
122_F 258_N 0.67 0.02
75_F 179_I 0.67 0.02
138_D 251_G 0.66 0.02
156_E 412_I 0.66 0.02
57_A 256_V 0.66 0.02
99_I 258_N 0.66 0.02
80_F 410_S 0.65 0.02
60_D 269_T 0.65 0.02
145_I 389_R 0.64 0.02
34_A 172_H 0.64 0.02
132_C 134_G 0.64 0.02
65_P 194_R 0.64 0.02
118_G 301_T 0.64 0.01
74_T 299_F 0.64 0.01
151_A 53_Q 0.63 0.01
126_F 117_L 0.63 0.01
50_V 361_L 0.63 0.01
135_G 94_M 0.63 0.01
33_R 66_G 0.63 0.01
107_A 49_E 0.63 0.01
20_E 52_N 0.63 0.01
74_T 211_G 0.63 0.01
79_I 131_F 0.62 0.01
50_V 236_Y 0.62 0.01
38_E 132_L 0.62 0.01
132_C 319_S 0.62 0.01
100_N 257_K 0.62 0.01
160_E 169_L 0.61 0.01
60_D 50_I 0.61 0.01
96_V 139_A 0.61 0.01
138_D 325_L 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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