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OPENSEQ.org

SKP - UPPS
UniProt: P0AEU7 - P60472
Length: 414
Sequences: 373
Seq/Len: 0.96
I_Prob: 0.00

SKP - Chaperone protein skp
Paralog alert: 0.11 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: SKP
UPPS - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: UPPS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
144_Y 40_A 1.27 0.00
104_D 192_V 1.26 0.00
32_L 240_E 1.25 0.00
105_R 229_F 1.25 0.00
136_V 155_V 1.18 0.00
28_N 236_F 1.14 0.00
27_V 193_I 1.13 0.00
115_K 124_I 1.13 0.00
25_A 23_I 1.13 0.00
49_E 146_G 1.13 0.00
124_V 104_N 1.12 0.00
108_R 146_G 1.11 0.00
138_D 68_Y 1.10 0.00
108_R 72_S 1.09 0.00
77_G 220_L 1.09 0.00
27_V 128_E 1.09 0.00
111_E 137_L 1.05 0.00
115_K 143_A 1.04 0.00
32_L 29_G 1.03 0.00
54_A 189_V 1.00 0.00
55_S 137_L 1.00 0.00
130_S 233_L 0.99 0.00
123_A 50_V 0.99 0.00
158_K 53_A 0.99 0.00
50_F 146_G 0.99 0.00
90_Q 44_K 0.98 0.00
100_A 189_V 0.98 0.00
144_Y 102_R 0.97 0.00
112_E 143_A 0.96 0.00
124_V 169_P 0.95 0.00
111_E 69_A 0.95 0.00
83_L 237_A 0.94 0.00
108_R 143_A 0.94 0.00
133_I 102_R 0.93 0.00
23_K 119_R 0.92 0.00
89_A 236_F 0.92 0.00
154_A 35_Q 0.92 0.00
32_L 55_S 0.92 0.00
132_D 60_N 0.91 0.00
40_T 226_E 0.91 0.00
160_V 189_V 0.91 0.00
144_Y 183_M 0.91 0.00
84_E 33_K 0.90 0.00
147_S 61_G 0.90 0.00
30_G 236_F 0.90 0.00
124_V 41_F 0.89 0.00
116_L 61_G 0.89 0.00
136_V 168_Q 0.88 0.00
32_L 39_R 0.88 0.00
81_T 57_A 0.88 0.00
66_A 114_S 0.88 0.00
92_Q 158_L 0.87 0.00
28_N 162_V 0.87 0.00
146_S 105_V 0.87 0.00
120_I 156_R 0.86 0.00
25_A 100_L 0.86 0.00
86_D 168_Q 0.86 0.00
25_A 113_T 0.86 0.00
95_A 204_F 0.86 0.00
122_T 212_A 0.85 0.00
145_N 21_V 0.85 0.00
113_R 212_A 0.85 0.00
143_A 104_N 0.84 0.00
84_E 247_E 0.84 0.00
76_A 53_A 0.84 0.00
134_D 127_S 0.84 0.00
102_E 217_T 0.83 0.00
65_Q 105_V 0.83 0.00
92_Q 138_T 0.83 0.00
143_A 173_D 0.83 0.00
29_M 246_T 0.83 0.00
78_S 235_A 0.83 0.00
134_D 186_L 0.82 0.00
131_Q 34_K 0.82 0.00
60_M 93_L 0.82 0.00
105_R 198_E 0.82 0.00
155_D 21_V 0.81 0.00
152_I 46_G 0.81 0.00
120_I 104_N 0.81 0.00
124_V 58_A 0.81 0.00
24_I 146_G 0.81 0.00
130_S 36_G 0.81 0.00
76_A 163_Q 0.81 0.00
135_L 223_D 0.80 0.00
50_F 116_F 0.80 0.00
141_A 192_V 0.80 0.00
35_Q 57_A 0.80 0.00
112_E 124_I 0.80 0.00
50_F 143_A 0.80 0.00
68_M 163_Q 0.80 0.00
153_T 247_E 0.80 0.00
120_I 95_S 0.80 0.00
115_K 144_N 0.79 0.00
26_I 23_I 0.79 0.00
135_L 164_Q 0.79 0.00
101_F 120_L 0.79 0.00
72_Q 63_E 0.79 0.00
62_T 218_D 0.79 0.00
82_K 220_L 0.78 0.00
82_K 122_E 0.78 0.00
36_V 147_G 0.78 0.00
31_S 68_Y 0.78 0.00
137_V 136_G 0.78 0.00
110_N 225_D 0.78 0.00
124_V 49_S 0.78 0.00
97_K 183_M 0.78 0.00
111_E 124_I 0.77 0.00
75_K 229_F 0.77 0.00
39_K 117_N 0.77 0.00
8_A 58_A 0.77 0.00
84_E 234_N 0.77 0.00
156_V 47_A 0.76 0.00
19_Q 166_N 0.76 0.00
46_L 220_L 0.76 0.00
101_F 150_D 0.76 0.00
88_M 236_F 0.76 0.00
93_T 169_P 0.76 0.00
89_A 67_L 0.76 0.00
90_Q 154_G 0.76 0.00
80_R 19_R 0.76 0.00
61_E 105_V 0.76 0.00
156_V 44_K 0.76 0.00
29_M 84_A 0.76 0.00
86_D 63_E 0.75 0.00
116_L 87_E 0.75 0.00
73_S 50_V 0.75 0.00
18_A 205_L 0.75 0.00
139_A 45_A 0.75 0.00
161_K 33_K 0.74 0.00
103_Q 116_F 0.74 0.00
106_A 146_G 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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