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OPENSEQ.org

RIMO - YBEM
UniProt: P0AEI4 - P39874
Length: 703
Sequences: 465
Seq/Len: 0.69
I_Prob: 0.00

RIMO - Ribosomal protein S12 methylthiotransferase RimO
Paralog alert: 0.80 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: MIAB RIMO
YBEM - Putative UPF0012 hydrolase YbeM
Paralog alert: 0.77 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: YAFV YBEM YOBB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
312_T 37_A 1.54 0.00
175_L 232_I 1.31 0.00
392_E 78_T 1.18 0.00
397_G 146_T 1.10 0.00
355_V 93_W 1.07 0.00
224_E 168_V 1.07 0.00
379_V 160_A 1.06 0.00
100_I 184_S 1.06 0.00
219_M 119_I 1.06 0.00
279_G 38_L 1.03 0.00
172_G 168_V 1.00 0.00
155_T 84_H 1.00 0.00
174_V 141_K 1.00 0.00
44_D 84_H 0.99 0.00
396_I 144_L 0.99 0.00
33_T 142_V 0.97 0.00
302_S 177_P 0.95 0.00
313_E 4_A 0.95 0.00
428_V 199_V 0.95 0.00
279_G 180_E 0.95 0.00
214_P 33_A 0.94 0.00
245_D 192_L 0.94 0.00
397_G 80_I 0.94 0.00
183_D 79_T 0.93 0.00
48_V 72_S 0.93 0.00
346_A 168_V 0.93 0.00
396_I 143_G 0.93 0.00
280_S 68_L 0.91 0.00
438_G 226_S 0.91 0.00
189_I 83_I 0.90 0.00
325_E 214_I 0.90 0.00
290_Q 167_L 0.89 0.00
259_Y 172_A 0.89 0.00
396_I 152_F 0.89 0.00
42_Y 158_A 0.89 0.00
172_G 225_A 0.89 0.00
430_H 142_V 0.88 0.00
271_I 222_I 0.88 0.00
146_I 127_A 0.87 0.00
43_D 188_A 0.87 0.00
223_C 231_L 0.86 0.00
271_I 37_A 0.86 0.00
354_E 70_R 0.85 0.00
355_V 211_Q 0.85 0.00
219_M 214_I 0.85 0.00
48_V 215_I 0.85 0.00
47_M 154_E 0.85 0.00
171_I 13_V 0.85 0.00
73_E 226_S 0.85 0.00
362_R 170_P 0.84 0.00
133_G 143_G 0.84 0.00
351_V 172_A 0.84 0.00
74_N 18_A 0.84 0.00
113_V 127_A 0.83 0.00
39_V 166_I 0.82 0.00
306_V 13_V 0.82 0.00
221_S 121_E 0.82 0.00
429_E 5_A 0.82 0.00
90_I 143_G 0.82 0.00
228_K 76_M 0.81 0.00
100_I 217_P 0.81 0.00
292_R 133_P 0.81 0.00
429_E 86_P 0.81 0.00
221_S 179_K 0.81 0.00
289_K 228_M 0.81 0.00
146_I 64_F 0.80 0.00
287_R 153_P 0.80 0.00
223_C 35_L 0.80 0.00
266_H 92_A 0.80 0.00
325_E 72_S 0.80 0.00
416_T 13_V 0.80 0.00
298_L 217_P 0.80 0.00
12_F 83_I 0.80 0.00
183_D 13_V 0.80 0.00
328_L 157_L 0.80 0.00
15_L 152_F 0.80 0.00
297_E 76_M 0.79 0.00
439_S 28_A 0.79 0.00
425_R 222_I 0.79 0.00
378_K 214_I 0.79 0.00
253_E 126_D 0.79 0.00
74_N 146_T 0.79 0.00
419_K 108_Y 0.78 0.00
74_N 221_T 0.78 0.00
47_M 97_V 0.78 0.00
388_D 152_F 0.78 0.00
388_D 231_L 0.78 0.00
178_A 102_G 0.78 0.00
321_D 48_H 0.78 0.00
440_R 15_E 0.78 0.00
433_E 136_E 0.78 0.00
219_M 181_H 0.77 0.00
212_G 107_R 0.77 0.00
430_H 225_A 0.77 0.00
48_V 109_A 0.77 0.00
287_R 152_F 0.77 0.00
357_E 150_L 0.77 0.00
371_S 225_A 0.77 0.00
237_Y 5_A 0.76 0.00
381_R 112_H 0.76 0.00
43_D 68_L 0.76 0.00
237_Y 154_E 0.76 0.00
427_K 28_A 0.76 0.00
50_V 211_Q 0.76 0.00
223_C 1_M 0.76 0.00
255_K 204_C 0.76 0.00
112_H 43_L 0.76 0.00
335_K 230_A 0.75 0.00
280_S 35_L 0.75 0.00
382_E 137_V 0.75 0.00
151_N 143_G 0.75 0.00
260_L 125_V 0.75 0.00
346_A 91_R 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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