May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ATPD - RHO
UniProt: P0ABA4 - P0AG30
Length: 596
Sequences: 407
Seq/Len: 0.76
I_Prob: 0.00

ATPD - ATP synthase subunit delta
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ATPD
RHO - Transcription termination factor Rho
Paralog alert: 0.19 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RHO
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
168_L 284_V 1.32 0.00
139_L 258_K 1.25 0.00
76_L 284_V 1.23 0.00
12_A 348_K 1.10 0.00
99_L 384_R 1.10 0.00
137_V 97_I 1.08 0.00
167_R 386_I 1.07 0.00
116_A 378_Q 1.06 0.00
102_V 129_N 1.05 0.00
148_M 195_I 1.04 0.00
109_V 135_N 1.03 0.00
6_T 319_A 1.00 0.00
168_L 219_M 1.00 0.00
29_Q 207_L 1.00 0.00
128_A 313_L 0.99 0.00
8_A 169_G 0.99 0.00
47_L 62_F 0.98 0.00
86_L 79_I 0.98 0.00
32_L 79_I 0.97 0.00
157_D 97_I 0.97 0.00
8_A 207_L 0.97 0.00
129_M 344_H 0.96 0.00
172_A 351_E 0.96 0.00
7_V 227_V 0.96 0.00
149_A 206_V 0.96 0.00
119_E 375_E 0.95 0.00
137_V 384_R 0.95 0.00
12_A 166_S 0.95 0.00
15_A 119_V 0.95 0.00
156_G 207_L 0.94 0.00
148_M 132_L 0.94 0.00
129_M 119_V 0.94 0.00
43_Q 97_I 0.94 0.00
8_A 240_V 0.93 0.00
129_M 327_M 0.93 0.00
146_S 379_K 0.93 0.00
85_R 110_Y 0.92 0.00
124_K 162_L 0.90 0.00
7_V 257_K 0.90 0.00
157_D 309_E 0.89 0.00
172_A 148_E 0.89 0.00
133_L 319_A 0.89 0.00
54_P 54_V 0.89 0.00
3_E 284_V 0.88 0.00
109_V 174_G 0.88 0.00
116_A 119_V 0.88 0.00
25_V 258_K 0.88 0.00
92_V 388_H 0.88 0.00
147_V 378_Q 0.88 0.00
74_Q 127_A 0.87 0.00
168_L 94_G 0.87 0.00
28_W 337_G 0.87 0.00
10_P 334_E 0.86 0.00
158_M 310_G 0.86 0.00
159_V 55_L 0.86 0.00
114_A 310_G 0.85 0.00
156_G 63_G 0.85 0.00
149_A 219_M 0.85 0.00
151_V 144_R 0.85 0.00
97_I 162_L 0.85 0.00
61_F 267_I 0.85 0.00
14_A 93_T 0.85 0.00
129_M 59_Q 0.84 0.00
162_G 81_V 0.84 0.00
60_S 119_V 0.84 0.00
80_M 249_K 0.84 0.00
8_A 294_L 0.83 0.00
9_R 55_L 0.83 0.00
160_I 169_G 0.83 0.00
157_D 391_G 0.83 0.00
167_R 316_I 0.83 0.00
129_M 313_L 0.83 0.00
121_Q 135_N 0.82 0.00
10_P 294_L 0.82 0.00
63_A 220_Q 0.82 0.00
50_G 219_M 0.82 0.00
170_R 93_T 0.81 0.00
111_V 350_A 0.81 0.00
158_M 119_V 0.81 0.00
156_G 60_D 0.81 0.00
137_V 121_F 0.81 0.00
38_V 367_K 0.80 0.00
152_I 63_G 0.80 0.00
163_S 197_Y 0.80 0.00
156_G 249_K 0.80 0.00
4_F 335_F 0.80 0.00
167_R 189_Q 0.80 0.00
168_L 55_L 0.80 0.00
120_Q 127_A 0.79 0.00
69_L 352_K 0.79 0.00
119_E 406_T 0.79 0.00
57_L 60_D 0.79 0.00
149_A 235_P 0.79 0.00
13_K 82_S 0.79 0.00
2_S 319_A 0.79 0.00
53_A 372_T 0.79 0.00
102_V 102_R 0.79 0.00
3_E 366_R 0.79 0.00
7_V 137_T 0.79 0.00
125_I 245_M 0.78 0.00
70_D 227_V 0.78 0.00
65_C 170_R 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.1073 seconds.