May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DPO3B - YIDD
UniProt: P0A988 - P0A8C8
Length: 451
Sequences: 323
Seq/Len: 0.73
I_Prob: 0.00

DPO3B - DNA polymerase III subunit beta
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DPO3B
YIDD - Putative membrane protein insertion efficiency factor
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YIDD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
336_V 36_T 1.40 0.00
359_Y 44_A 1.39 0.00
35_L 33_F 1.28 0.00
115_D 42_I 1.28 0.00
3_F 33_F 1.27 0.00
357_A 48_F 1.26 0.00
304_E 23_I 1.25 0.00
229_D 72_D 1.24 0.00
321_V 33_F 1.22 0.00
98_L 57_T 1.21 0.00
122_W 63_K 1.18 0.00
80_R 48_F 1.15 0.00
317_I 33_F 1.10 0.00
242_P 76_P 1.08 0.00
116_F 63_K 1.07 0.00
282_R 67_L 1.07 0.00
271_A 57_T 1.07 0.00
77_D 57_T 1.07 0.00
50_E 15_L 1.07 0.00
293_T 29_P 1.06 0.00
76_F 63_K 1.05 0.00
118_N 23_I 1.05 0.00
58_A 29_P 1.03 0.00
203_L 20_Q 1.03 0.00
192_S 33_F 1.03 0.00
345_S 18_V 1.01 0.00
116_F 78_G 1.00 0.00
163_E 16_I 1.00 0.00
286_S 15_L 0.97 0.00
314_E 20_Q 0.97 0.00
40_G 15_L 0.96 0.00
68_T 51_I 0.95 0.00
120_D 21_R 0.95 0.00
156_N 9_S 0.94 0.00
93_E 17_R 0.94 0.00
324_V 34_T 0.94 0.00
298_E 58_V 0.93 0.00
54_V 16_I 0.93 0.00
138_L 32_R 0.92 0.00
338_M 13_I 0.92 0.00
216_V 55_W 0.92 0.00
238_D 12_L 0.91 0.00
280_G 65_H 0.90 0.00
96_R 18_V 0.90 0.00
240_R 16_I 0.90 0.00
356_S 11_V 0.89 0.00
326_D 74_P 0.89 0.00
357_A 45_L 0.89 0.00
239_G 65_H 0.89 0.00
263_L 33_F 0.88 0.00
219_G 20_Q 0.88 0.00
145_S 67_L 0.88 0.00
169_T 12_L 0.88 0.00
190_S 58_V 0.88 0.00
324_V 67_L 0.88 0.00
10_L 44_A 0.87 0.00
198_K 75_V 0.87 0.00
361_V 30_H 0.87 0.00
302_A 32_R 0.87 0.00
154_Y 65_H 0.86 0.00
335_N 61_V 0.86 0.00
121_D 54_S 0.85 0.00
73_R 61_V 0.85 0.00
123_Q 72_D 0.85 0.00
85_G 8_G 0.85 0.00
39_D 20_Q 0.85 0.00
177_L 32_R 0.85 0.00
201_I 48_F 0.85 0.00
82_L 48_F 0.84 0.00
150_D 56_L 0.84 0.00
238_D 9_S 0.84 0.00
202_E 20_Q 0.84 0.00
28_P 50_V 0.84 0.00
255_H 10_R 0.84 0.00
75_F 27_L 0.83 0.00
357_A 70_G 0.83 0.00
8_E 20_Q 0.83 0.00
8_E 75_V 0.83 0.00
265_Q 55_W 0.83 0.00
9_H 41_G 0.83 0.00
203_L 42_I 0.82 0.00
18_S 76_P 0.82 0.00
268_A 23_I 0.82 0.00
195_V 32_R 0.82 0.00
112_P 67_L 0.82 0.00
361_V 11_V 0.82 0.00
28_P 75_V 0.82 0.00
315_M 74_P 0.82 0.00
352_A 25_P 0.82 0.00
224_R 57_T 0.81 0.00
306_L 68_H 0.81 0.00
230_F 47_R 0.81 0.00
160_F 68_H 0.81 0.00
225_A 62_L 0.81 0.00
187_S 54_S 0.80 0.00
3_F 13_I 0.80 0.00
334_E 9_S 0.80 0.00
218_I 13_I 0.80 0.00
276_E 14_A 0.80 0.00
330_A 42_I 0.80 0.00
308_V 33_F 0.80 0.00
30_L 53_G 0.80 0.00
104_S 52_K 0.80 0.00
325_L 57_T 0.80 0.00
210_G 46_R 0.79 0.00
360_V 21_R 0.79 0.00
140_E 63_K 0.79 0.00
315_M 72_D 0.79 0.00
33_L 77_P 0.79 0.00
167_L 11_V 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.2464 seconds.