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OPENSEQ.org

DPO3B - RNPA
UniProt: P0A988 - P0A7Y8
Length: 485
Sequences: 402
Seq/Len: 0.84
I_Prob: 0.01

DPO3B - DNA polymerase III subunit beta
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DPO3B
RNPA - Ribonuclease P protein component
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNPA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
326_D 23_Q 1.49 0.01
152_R 66_K 1.48 0.01
46_G 12_L 1.32 0.00
7_R 111_R 1.28 0.00
328_L 25_P 1.27 0.00
338_M 69_T 1.25 0.00
327_V 13_L 1.25 0.00
330_A 97_D 1.23 0.00
330_A 35_I 1.20 0.00
264_K 17_Q 1.19 0.00
149_Q 22_F 1.17 0.00
274_S 49_L 1.17 0.00
242_P 11_R 1.16 0.00
174_G 40_N 1.14 0.00
253_D 85_F 1.12 0.00
162_T 108_L 1.12 0.00
290_L 58_R 1.10 0.00
88_I 70_R 1.10 0.00
77_D 25_P 1.08 0.00
128_F 79_E 1.08 0.00
331_L 111_R 1.08 0.00
167_L 100_A 1.08 0.00
327_V 90_K 1.08 0.00
142_T 88_V 1.07 0.00
99_V 59_A 1.07 0.00
138_L 101_L 1.07 0.00
3_F 89_A 1.06 0.00
172_T 11_R 1.06 0.00
10_L 21_V 1.06 0.00
263_L 17_Q 1.04 0.00
34_L 46_R 1.04 0.00
171_A 88_V 1.04 0.00
154_Y 63_N 1.03 0.00
209_G 104_A 1.02 0.00
39_D 97_D 1.02 0.00
214_L 80_L 1.02 0.00
55_A 28_A 1.01 0.00
134_T 18_F 1.01 0.00
343_S 91_K 1.01 0.00
153_Y 89_A 1.01 0.00
197_R 69_T 1.00 0.00
241_F 50_T 1.00 0.00
292_I 16_S 0.99 0.00
328_L 51_V 0.99 0.00
183_P 95_D 0.98 0.00
90_V 53_K 0.98 0.00
214_L 33_I 0.97 0.00
10_L 12_L 0.97 0.00
132_Q 74_R 0.97 0.00
324_V 9_E 0.96 0.00
190_S 79_E 0.96 0.00
268_A 90_K 0.96 0.00
300_E 57_R 0.96 0.00
32_N 47_I 0.95 0.00
35_L 51_V 0.95 0.00
145_S 89_A 0.95 0.00
290_L 92_G 0.95 0.00
57_V 16_S 0.95 0.00
155_L 66_K 0.94 0.00
272_I 57_R 0.94 0.00
273_L 46_R 0.94 0.00
116_F 75_L 0.93 0.00
346_S 57_R 0.93 0.00
129_T 91_K 0.93 0.00
283_L 92_G 0.92 0.00
93_E 111_R 0.92 0.00
334_E 71_E 0.92 0.00
326_D 71_E 0.92 0.00
14_L 77_Q 0.92 0.00
157_G 46_R 0.92 0.00
195_V 72_S 0.92 0.00
227_V 72_S 0.91 0.00
203_L 21_V 0.91 0.00
223_I 103_E 0.91 0.00
212_N 35_I 0.91 0.00
159_L 74_R 0.91 0.00
47_T 66_K 0.91 0.00
330_A 31_P 0.90 0.00
263_L 87_V 0.90 0.00
330_A 99_R 0.90 0.00
168_R 17_Q 0.90 0.00
132_Q 59_A 0.90 0.00
292_I 17_Q 0.90 0.00
2_K 55_N 0.90 0.00
304_E 51_V 0.89 0.00
345_S 51_V 0.89 0.00
77_D 101_L 0.88 0.00
208_D 49_L 0.88 0.00
174_G 73_F 0.88 0.00
269_R 46_R 0.88 0.00
152_R 63_N 0.88 0.00
303_E 42_L 0.88 0.00
110_T 50_T 0.88 0.00
142_T 90_K 0.88 0.00
107_S 83_M 0.88 0.00
116_F 71_E 0.88 0.00
35_L 87_V 0.88 0.00
180_C 36_L 0.87 0.00
72_A 48_G 0.87 0.00
127_E 17_Q 0.87 0.00
50_E 59_A 0.87 0.00
305_I 90_K 0.86 0.00
338_M 12_L 0.86 0.00
53_M 27_R 0.86 0.00
193_V 18_F 0.86 0.00
105_R 100_A 0.86 0.00
88_I 9_E 0.86 0.00
91_Q 103_E 0.85 0.00
287_E 95_D 0.85 0.00
7_R 68_L 0.85 0.00
54_V 50_T 0.85 0.00
193_V 56_V 0.85 0.00
290_L 61_E 0.84 0.00
232_F 22_F 0.84 0.00
283_L 11_R 0.84 0.00
257_E 85_F 0.84 0.00
155_L 11_R 0.84 0.00
362_M 6_F 0.84 0.00
115_D 39_L 0.84 0.00
213_P 41_S 0.84 0.00
246_R 44_H 0.84 0.00
99_V 89_A 0.84 0.00
111_L 63_N 0.84 0.00
125_E 97_D 0.83 0.00
51_M 80_L 0.83 0.00
359_Y 74_R 0.83 0.00
170_V 22_F 0.83 0.00
319_F 48_G 0.83 0.00
35_L 61_E 0.83 0.00
146_M 33_I 0.83 0.00
315_M 84_D 0.82 0.00
359_Y 45_P 0.82 0.00
75_F 85_F 0.82 0.00
271_A 87_V 0.82 0.00
50_E 71_E 0.82 0.00
250_K 12_L 0.82 0.00
204_M 56_V 0.82 0.00
89_A 72_S 0.82 0.00
152_R 11_R 0.82 0.00
305_I 47_I 0.81 0.00
301_E 66_K 0.81 0.00
29_I 107_K 0.81 0.00
177_L 18_F 0.81 0.00
194_I 77_Q 0.81 0.00
237_V 93_V 0.81 0.00
169_T 72_S 0.81 0.00
306_L 17_Q 0.81 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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