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OPENSEQ.org

DPO3B - RECF
UniProt: P0A988 - P0A7H0
Length: 723
Sequences: 827
Seq/Len: 1.15
I_Prob: 0.03

DPO3B - DNA polymerase III subunit beta
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DPO3B
RECF - DNA replication and repair protein RecF
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RECF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
241_F 211_L 1.47 0.03
242_P 127_G 1.25 0.02
281_V 277_L 1.23 0.01
10_L 114_M 1.22 0.01
207_L 350_V 1.16 0.01
195_V 135_F 1.16 0.01
228_G 90_Q 1.16 0.01
227_V 28_L 1.15 0.01
193_V 28_L 1.14 0.01
10_L 274_L 1.13 0.01
170_V 40_L 1.12 0.01
158_M 27_F 1.11 0.01
216_V 11_F 1.11 0.01
256_L 156_R 1.10 0.01
57_V 39_V 1.09 0.01
60_V 188_I 1.09 0.01
172_T 159_K 1.09 0.01
199_G 156_R 1.08 0.01
14_L 28_L 1.08 0.01
38_A 43_I 1.07 0.01
19_G 50_R 1.06 0.01
271_A 99_G 1.06 0.01
346_S 316_L 1.05 0.01
9_H 185_A 1.04 0.01
313_A 218_F 1.03 0.01
361_V 278_M 1.03 0.01
172_T 127_G 1.03 0.01
346_S 312_R 1.03 0.01
73_R 329_V 1.02 0.01
218_I 91_G 1.02 0.01
301_E 350_V 1.02 0.01
354_S 39_V 1.02 0.01
77_D 42_A 1.01 0.01
79_C 301_I 1.00 0.01
50_E 210_F 1.00 0.01
11_L 256_L 1.00 0.01
349_I 196_S 0.99 0.01
37_V 251_P 0.99 0.01
130_L 15_E 0.99 0.01
26_T 282_R 0.99 0.01
239_G 320_L 0.98 0.01
267_F 14_I 0.98 0.01
234_S 17_A 0.98 0.01
115_D 148_F 0.98 0.01
315_M 43_I 0.98 0.01
79_C 59_R 0.98 0.01
200_V 57_I 0.98 0.01
84_E 182_I 0.97 0.01
327_V 278_M 0.97 0.01
115_D 252_H 0.97 0.01
2_K 158_L 0.97 0.01
105_R 112_M 0.97 0.01
17_V 142_H 0.96 0.01
21_L 274_L 0.96 0.01
27_L 144_E 0.96 0.01
292_I 85_L 0.96 0.01
104_S 43_I 0.96 0.01
355_Q 298_L 0.96 0.01
161_E 178_D 0.96 0.01
288_N 28_L 0.96 0.01
222_N 33_G 0.95 0.01
20_P 104_K 0.95 0.01
241_F 148_F 0.95 0.01
210_G 96_R 0.94 0.01
46_G 341_S 0.94 0.01
314_E 112_M 0.94 0.01
174_G 241_D 0.94 0.01
241_F 49_G 0.94 0.01
171_A 218_F 0.94 0.01
281_V 50_R 0.94 0.01
50_E 177_W 0.94 0.01
3_F 101_D 0.94 0.01
270_A 104_K 0.94 0.01
338_M 135_F 0.93 0.01
90_V 262_G 0.93 0.01
216_V 97_I 0.93 0.01
166_E 236_R 0.93 0.01
34_L 196_S 0.93 0.01
110_T 282_R 0.93 0.01
50_E 116_L 0.93 0.01
241_F 142_H 0.92 0.01
3_F 11_F 0.92 0.01
147_A 177_W 0.92 0.01
12_K 136_L 0.92 0.01
69_T 271_R 0.92 0.01
315_M 261_D 0.92 0.01
51_M 72_G 0.91 0.01
359_Y 148_F 0.91 0.01
320_N 251_P 0.91 0.01
50_E 328_F 0.91 0.01
32_N 38_S 0.91 0.01
42_L 355_I 0.91 0.01
101_S 135_F 0.91 0.01
75_F 348_F 0.90 0.01
205_R 267_D 0.90 0.01
155_L 161_R 0.90 0.01
88_I 156_R 0.90 0.01
270_A 120_E 0.89 0.01
197_R 276_L 0.89 0.01
130_L 288_F 0.89 0.01
349_I 220_F 0.89 0.01
276_E 45_T 0.89 0.01
326_D 353_G 0.89 0.01
203_L 283_L 0.89 0.01
145_S 206_T 0.89 0.01
183_P 23_P 0.89 0.01
50_E 160_Q 0.89 0.01
338_M 261_D 0.88 0.01
361_V 246_Y 0.88 0.01
3_F 284_A 0.88 0.01
48_D 253_K 0.88 0.01
178_A 49_G 0.88 0.01
211_D 3_L 0.88 0.01
202_E 300_L 0.88 0.01
187_S 219_S 0.88 0.01
134_T 156_R 0.88 0.01
331_L 293_S 0.87 0.01
164_G 352_K 0.87 0.01
241_F 286_G 0.87 0.01
17_V 18_D 0.87 0.01
139_I 174_L 0.87 0.01
361_V 39_V 0.87 0.01
4_T 284_A 0.86 0.01
164_G 280_A 0.86 0.01
147_A 348_F 0.86 0.01
239_G 14_I 0.86 0.01
357_A 210_F 0.86 0.01
150_D 38_S 0.86 0.01
219_G 211_L 0.86 0.01
57_V 6_L 0.86 0.01
203_L 276_L 0.85 0.01
321_V 52_F 0.85 0.01
155_L 46_L 0.85 0.01
315_M 53_R 0.85 0.01
314_E 232_E 0.85 0.01
308_V 3_L 0.85 0.01
81_G 203_M 0.85 0.01
338_M 22_S 0.85 0.01
346_S 14_I 0.85 0.01
245_R 282_R 0.85 0.01
94_G 343_E 0.85 0.01
361_V 162_N 0.85 0.01
5_V 305_A 0.85 0.01
348_Q 243_Q 0.84 0.01
287_E 194_E 0.84 0.01
3_F 166_R 0.84 0.01
90_V 147_F 0.84 0.01
115_D 112_M 0.84 0.01
135_M 20_A 0.84 0.01
77_D 226_K 0.84 0.01
119_L 68_F 0.84 0.01
343_S 199_I 0.84 0.01
297_P 305_A 0.84 0.01
115_D 176_P 0.83 0.01
351_D 157_L 0.83 0.01
75_F 201_A 0.83 0.01
255_H 183_P 0.83 0.00
114_A 154_L 0.83 0.00
175_H 138_W 0.83 0.00
246_R 300_L 0.83 0.00
315_M 60_V 0.83 0.00
308_V 182_I 0.83 0.00
294_A 241_D 0.83 0.00
77_D 171_Y 0.83 0.00
152_R 49_G 0.83 0.00
254_K 33_G 0.83 0.00
264_K 63_H 0.83 0.00
214_L 172_E 0.82 0.00
120_D 241_D 0.82 0.00
211_D 22_S 0.82 0.00
212_N 239_E 0.82 0.00
218_I 196_S 0.82 0.00
270_A 105_V 0.82 0.00
195_V 42_A 0.82 0.00
79_C 117_I 0.82 0.00
145_S 47_G 0.82 0.00
290_L 136_L 0.82 0.00
24_R 222_R 0.82 0.00
347_V 164_A 0.81 0.00
246_R 46_L 0.81 0.00
104_S 68_F 0.81 0.00
39_D 355_I 0.81 0.00
281_V 189_S 0.81 0.00
213_P 39_V 0.81 0.00
147_A 211_L 0.81 0.00
24_R 329_V 0.81 0.00
198_K 3_L 0.81 0.00
22_G 122_F 0.80 0.00
10_L 159_K 0.80 0.00
237_V 56_Q 0.80 0.00
15_Q 188_I 0.80 0.00
25_P 121_G 0.80 0.00
346_S 271_R 0.80 0.00
346_S 139_G 0.80 0.00
19_G 38_S 0.80 0.00
108_L 265_V 0.80 0.00
288_N 356_T 0.80 0.00
340_L 253_K 0.80 0.00
166_E 291_R 0.80 0.00
24_R 23_P 0.80 0.00
134_T 210_F 0.80 0.00
292_I 331_A 0.79 0.00
348_Q 162_N 0.79 0.00
266_A 313_R 0.79 0.00
314_E 284_A 0.79 0.00
59_L 47_G 0.79 0.00
115_D 287_E 0.79 0.00
353_A 27_F 0.79 0.00
41_T 351_E 0.79 0.00
296_N 126_N 0.79 0.00
101_S 282_R 0.79 0.00
229_D 298_L 0.79 0.00
354_S 188_I 0.79 0.00
241_F 185_A 0.79 0.00
55_A 43_I 0.79 0.00
46_G 313_R 0.79 0.00
145_S 331_A 0.79 0.00
214_L 181_L 0.79 0.00
195_V 77_E 0.79 0.00
229_D 18_D 0.79 0.00
113_A 278_M 0.79 0.00
219_G 42_A 0.79 0.00
135_M 199_I 0.79 0.00
250_K 28_L 0.79 0.00
116_F 328_F 0.78 0.00
327_V 117_I 0.78 0.00
293_T 166_R 0.78 0.00
267_F 147_F 0.78 0.00
99_V 260_A 0.78 0.00
169_T 335_E 0.78 0.00
216_V 152_S 0.78 0.00
28_P 284_A 0.78 0.00
121_D 107_E 0.78 0.00
319_F 136_L 0.78 0.00
73_R 218_F 0.78 0.00
175_H 274_L 0.78 0.00
151_V 142_H 0.78 0.00
40_G 351_E 0.78 0.00
340_L 120_E 0.78 0.00
90_V 10_D 0.78 0.00
10_L 137_D 0.78 0.00
330_A 199_I 0.77 0.00
266_A 331_A 0.77 0.00
118_N 154_L 0.77 0.00
245_R 156_R 0.77 0.00
39_D 82_A 0.77 0.00
248_L 120_E 0.77 0.00
317_I 354_K 0.77 0.00
290_L 22_S 0.77 0.00
273_L 113_P 0.77 0.00
207_L 136_L 0.77 0.00
29_I 337_V 0.77 0.00
205_R 27_F 0.77 0.00
307_D 188_I 0.77 0.00
32_N 117_I 0.77 0.00
69_T 275_K 0.77 0.00
25_P 312_R 0.77 0.00
361_V 158_L 0.77 0.00
132_Q 268_T 0.77 0.00
167_L 205_D 0.77 0.00
98_L 10_D 0.77 0.00
122_W 253_K 0.77 0.00
322_S 180_E 0.77 0.00
211_D 310_D 0.77 0.00
271_A 60_V 0.77 0.00
234_S 294_G 0.77 0.00
32_N 40_L 0.77 0.00
12_K 299_Y 0.77 0.00
258_A 294_G 0.76 0.00
331_L 156_R 0.76 0.00
332_K 322_A 0.76 0.00
280_G 141_F 0.76 0.00
237_V 53_R 0.76 0.00
309_T 235_E 0.76 0.00
10_L 70_L 0.76 0.00
99_V 61_I 0.76 0.00
3_F 318_S 0.76 0.00
82_L 283_L 0.76 0.00
136_K 339_D 0.76 0.00
273_L 348_F 0.76 0.00
312_G 262_G 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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