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OPENSEQ.org

NRDR - RIBD
UniProt: P0A8D0 - P25539
Length: 516
Sequences: 398
Seq/Len: 0.79
I_Prob: 0.00

NRDR - Transcriptional repressor NrdR
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NRDR
RIBD - Riboflavin biosynthesis protein RibD
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RIBD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
55_N 16_R 1.19 0.00
21_E 31_I 1.14 0.00
108_I 356_V 1.12 0.00
10_D 361_C 1.11 0.00
2_H 201_D 1.09 0.00
69_G 43_H 1.08 0.00
5_F 304_L 1.07 0.00
108_I 234_S 1.03 0.00
125_I 249_G 1.03 0.00
59_E 308_L 1.01 0.00
117_K 42_Y 1.01 0.00
67_R 160_R 1.01 0.00
24_S 85_C 1.00 0.00
70_M 188_H 1.00 0.00
21_E 121_D 0.99 0.00
108_I 58_M 0.98 0.00
74_L 185_A 0.98 0.00
45_E 43_H 0.97 0.00
110_N 236_N 0.95 0.00
146_R 253_F 0.95 0.00
103_V 145_G 0.93 0.00
117_K 339_L 0.93 0.00
75_E 180_V 0.91 0.00
41_F 211_L 0.91 0.00
70_M 203_A 0.91 0.00
66_L 336_L 0.90 0.00
51_V 58_M 0.90 0.00
55_N 89_I 0.90 0.00
62_N 116_Q 0.90 0.00
114_E 349_K 0.90 0.00
143_E 43_H 0.89 0.00
146_R 181_Q 0.89 0.00
89_N 232_I 0.89 0.00
119_L 281_L 0.89 0.00
145_A 93_V 0.88 0.00
25_V 8_A 0.88 0.00
96_R 39_G 0.87 0.00
52_V 33_K 0.87 0.00
108_I 250_E 0.87 0.00
104_P 257_Q 0.86 0.00
84_V 61_E 0.86 0.00
125_I 208_W 0.86 0.00
114_E 240_P 0.85 0.00
52_V 148_Y 0.85 0.00
139_E 345_A 0.85 0.00
46_L 141_R 0.85 0.00
68_S 348_F 0.85 0.00
87_A 294_N 0.85 0.00
8_A 6_Y 0.85 0.00
46_L 137_G 0.85 0.00
148_E 326_L 0.84 0.00
39_T 32_V 0.84 0.00
55_N 126_L 0.84 0.00
41_F 363_H 0.84 0.00
45_E 46_A 0.83 0.00
103_V 300_A 0.83 0.00
103_V 18_R 0.83 0.00
67_R 326_L 0.83 0.00
12_K 140_K 0.83 0.00
66_L 337_P 0.82 0.00
58_R 234_S 0.82 0.00
133_S 297_W 0.82 0.00
125_I 187_S 0.82 0.00
148_E 285_M 0.82 0.00
121_K 304_L 0.81 0.00
69_G 305_A 0.81 0.00
75_E 43_H 0.81 0.00
85_E 167_E 0.81 0.00
117_K 162_A 0.81 0.00
52_V 108_A 0.81 0.00
11_T 342_L 0.81 0.00
72_R 80_R 0.81 0.00
66_L 335_T 0.81 0.00
147_L 194_S 0.81 0.00
35_N 296_I 0.81 0.00
136_D 322_A 0.81 0.00
132_R 190_I 0.81 0.00
20_G 112_L 0.80 0.00
52_V 80_R 0.80 0.00
18_L 48_E 0.80 0.00
119_L 58_M 0.80 0.00
147_L 229_R 0.80 0.00
121_K 165_S 0.80 0.00
32_L 94_A 0.80 0.00
145_A 163_M 0.80 0.00
15_D 205_T 0.79 0.00
105_S 11_L 0.79 0.00
84_V 262_E 0.79 0.00
12_K 43_H 0.78 0.00
69_G 344_D 0.78 0.00
112_V 45_R 0.78 0.00
61_F 146_F 0.78 0.00
21_E 126_L 0.78 0.00
45_E 104_N 0.77 0.00
88_I 328_S 0.77 0.00
88_I 93_V 0.77 0.00
49_P 46_A 0.77 0.00
105_S 120_I 0.77 0.00
85_E 229_R 0.77 0.00
121_K 155_A 0.76 0.00
94_Q 89_I 0.76 0.00
108_I 16_R 0.76 0.00
108_I 35_G 0.76 0.00
142_E 61_E 0.76 0.00
54_S 256_T 0.76 0.00
2_H 160_R 0.76 0.00
51_V 49_P 0.76 0.00
108_I 340_E 0.76 0.00
10_D 94_A 0.75 0.00
51_V 6_Y 0.75 0.00
54_S 296_I 0.75 0.00
141_G 330_A 0.75 0.00
139_E 311_A 0.75 0.00
62_N 189_A 0.75 0.00
5_F 108_A 0.75 0.00
55_N 43_H 0.75 0.00
21_E 244_I 0.74 0.00
143_E 205_T 0.74 0.00
118_K 342_L 0.74 0.00
103_V 285_M 0.74 0.00
46_L 153_L 0.74 0.00
7_F 292_Q 0.74 0.00
138_K 363_H 0.74 0.00
36_E 167_E 0.73 0.00
137_I 43_H 0.73 0.00
146_R 187_S 0.73 0.00
62_N 113_Y 0.73 0.00
74_L 137_G 0.73 0.00
61_F 229_R 0.73 0.00
104_P 234_S 0.73 0.00
106_K 18_R 0.73 0.00
21_E 183_L 0.72 0.00
71_L 309_L 0.72 0.00
43_V 266_T 0.72 0.00
22_G 294_N 0.72 0.00
55_N 57_R 0.72 0.00
146_R 8_A 0.72 0.00
32_L 104_N 0.72 0.00
74_L 141_R 0.72 0.00
73_A 279_L 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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