May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
NRDR - NUSB
UniProt: P0A8D0 - P0A780
Length: 288
Sequences: 275
Seq/Len: 0.96
I_Prob: 0.39
NRDR - Transcriptional repressor NrdR
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NRDR 		NUSB - N utilization substance protein B
Paralog alert: 0.76 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: NUSB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
22_G 92_L 1.81 0.39
51_V 110_L 1.56 0.22
21_E 63_D 1.54 0.21
99_G 102_V 1.48 0.18
46_L 48_F 1.38 0.13
21_E 98_V 1.36 0.13
41_F 54_G 1.33 0.12
69_G 119_S 1.32 0.11
41_F 108_I 1.28 0.10
88_I 43_V 1.26 0.09
70_M 51_L 1.25 0.09
85_E 99_P 1.24 0.09
45_E 107_A 1.20 0.07
91_I 88_A 1.19 0.07
70_M 66_M 1.16 0.07
107_M 90_Y 1.16 0.07
70_M 71_S 1.14 0.06
49_P 72_R 1.12 0.06
64_E 45_V 1.12 0.06
52_V 66_M 1.11 0.06
7_F 17_L 1.11 0.05
54_S 62_L 1.10 0.05
148_E 23_S 1.10 0.05
147_L 9_A 1.09 0.05
61_F 34_F 1.08 0.05
35_N 82_K 1.08 0.05
12_K 82_K 1.07 0.05
75_E 102_V 1.07 0.05
5_F 75_E 1.06 0.05
103_V 89_L 1.06 0.04
95_L 14_V 1.06 0.04
46_L 33_Q 1.03 0.04
12_K 43_V 1.02 0.04
49_P 81_E 1.01 0.04
11_T 92_L 1.01 0.04
112_V 57_T 1.01 0.04
119_L 98_V 1.01 0.04
51_V 111_A 1.00 0.04
87_A 123_V 1.00 0.04
112_V 62_L 1.00 0.04
137_I 66_M 1.00 0.04
51_V 27_I 0.99 0.03
125_I 102_V 0.98 0.03
58_R 105_N 0.98 0.03
15_D 86_R 0.98 0.03
15_D 55_V 0.97 0.03
147_L 128_D 0.97 0.03
83_D 138_K 0.96 0.03
55_N 108_I 0.96 0.03
20_G 70_L 0.96 0.03
68_S 73_L 0.96 0.03
66_L 52_L 0.95 0.03
147_L 116_A 0.95 0.03
35_N 121_K 0.95 0.03
144_I 81_E 0.95 0.03
101_R 115_G 0.95 0.03
90_H 122_F 0.94 0.03
108_I 51_L 0.93 0.03
101_R 30_V 0.93 0.03
139_E 119_S 0.93 0.03
133_S 115_G 0.92 0.03
81_S 32_Y 0.92 0.03
51_V 80_V 0.91 0.03
95_L 13_A 0.91 0.03
21_E 126_V 0.91 0.03
22_G 112_K 0.91 0.02
85_E 95_R 0.90 0.02
49_P 73_L 0.90 0.02
75_E 82_K 0.90 0.02
48_M 62_L 0.89 0.02
69_G 107_A 0.89 0.02
110_N 40_V 0.89 0.02
69_G 47_Y 0.89 0.02
55_N 74_L 0.89 0.02
92_K 37_E 0.89 0.02
84_V 56_A 0.88 0.02
119_L 9_A 0.88 0.02
118_K 123_V 0.88 0.02
148_E 52_L 0.87 0.02
121_K 116_A 0.87 0.02
105_S 35_L 0.87 0.02
52_V 80_V 0.87 0.02
16_S 123_V 0.86 0.02
45_E 115_G 0.86 0.02
125_I 88_A 0.86 0.02
62_N 67_K 0.86 0.02
46_L 34_F 0.86 0.02
66_L 92_L 0.86 0.02
10_D 101_K 0.86 0.02
52_V 52_L 0.85 0.02
20_G 9_A 0.85 0.02
60_P 78_G 0.85 0.02
85_E 86_R 0.85 0.02
68_S 12_C 0.84 0.02
82_D 114_F 0.84 0.02
21_E 132_P 0.84 0.02
60_P 54_G 0.84 0.02
12_K 44_D 0.84 0.02
97_A 89_L 0.84 0.02
127_F 118_D 0.84 0.02
64_E 93_S 0.83 0.02
87_A 117_E 0.83 0.02
45_E 87_I 0.83 0.02
32_L 126_V 0.82 0.02
5_F 21_Q 0.82 0.02
36_E 78_G 0.82 0.02
144_I 60_A 0.82 0.02
91_I 125_G 0.82 0.02
21_E 86_R 0.81 0.02
88_I 111_A 0.81 0.02
72_R 87_I 0.81 0.02
137_I 8_R 0.81 0.02
41_F 75_E 0.81 0.02
87_A 52_L 0.81 0.02
44_A 20_W 0.81 0.02
46_L 70_L 0.81 0.02
143_E 109_E 0.80 0.01
59_E 83_A 0.80 0.01
25_V 48_F 0.80 0.01
66_L 83_A 0.80 0.01
48_M 107_A 0.80 0.01
41_F 55_V 0.80 0.01
146_R 98_V 0.80 0.01
35_N 132_P 0.80 0.01
14_I 107_A 0.80 0.01
108_I 58_N 0.80 0.01
41_F 83_A 0.80 0.01
117_K 126_V 0.80 0.01
20_G 44_D 0.79 0.01
92_K 78_G 0.79 0.01
88_I 59_T 0.79 0.01
12_K 118_D 0.79 0.01
103_V 57_T 0.79 0.01
91_I 103_A 0.79 0.01
103_V 55_V 0.78 0.01
48_M 18_Y 0.78 0.01
36_E 20_W 0.78 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.5853 seconds.