May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RIMM - RNH2
UniProt: P0A7X6 - P10442
Length: 380
Sequences: 406
Seq/Len: 1.16
I_Prob: 0.03

RIMM - Ribosome maturation factor RimM
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RIMM
RNH2 - Ribonuclease HII
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNH2
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
174_I 70_L 1.46 0.03
72_I 51_E 1.37 0.02
73_K 171_L 1.17 0.01
180_P 151_D 1.15 0.01
156_V 63_E 1.06 0.01
156_V 180_T 1.03 0.01
48_F 174_L 1.03 0.01
62_S 12_V 1.03 0.01
103_E 180_T 0.98 0.01
84_N 124_K 0.97 0.01
154_R 137_I 0.97 0.01
94_D 186_S 0.96 0.01
135_S 174_L 0.96 0.01
174_I 53_R 0.94 0.01
13_P 174_L 0.93 0.01
81_D 18_V 0.93 0.01
127_V 84_L 0.92 0.01
28_W 132_I 0.92 0.01
71_I 40_I 0.91 0.01
180_P 168_A 0.90 0.01
156_V 103_E 0.90 0.01
29_L 116_P 0.89 0.01
25_I 43_L 0.89 0.01
74_L 124_K 0.89 0.01
107_Y 86_A 0.89 0.01
107_Y 118_P 0.89 0.01
69_D 43_L 0.88 0.01
128_V 154_F 0.88 0.01
136_N 83_I 0.87 0.01
19_M 130_P 0.87 0.01
163_V 13_A 0.87 0.01
122_Y 158_G 0.86 0.01
112_M 32_V 0.86 0.01
134_G 82_N 0.85 0.01
100_Q 151_D 0.85 0.01
14_I 93_R 0.84 0.00
17_G 151_D 0.84 0.00
126_K 75_P 0.83 0.00
172_R 12_V 0.82 0.00
128_V 102_P 0.82 0.00
132_E 87_T 0.82 0.00
25_I 12_V 0.82 0.00
20_G 162_H 0.82 0.00
102_E 93_R 0.82 0.00
138_V 33_I 0.81 0.00
60_L 102_P 0.81 0.00
130_M 91_M 0.81 0.00
49_I 82_N 0.80 0.00
137_D 95_V 0.80 0.00
29_L 103_E 0.80 0.00
102_E 162_H 0.79 0.00
168_D 69_S 0.79 0.00
43_D 96_A 0.79 0.00
112_M 58_Y 0.78 0.00
105_D 28_V 0.78 0.00
23_Y 75_P 0.78 0.00
17_G 129_V 0.78 0.00
135_S 76_H 0.77 0.00
164_I 104_Y 0.77 0.00
164_I 186_S 0.77 0.00
123_D 66_L 0.77 0.00
34_S 122_V 0.77 0.00
25_I 42_G 0.76 0.00
127_V 137_I 0.76 0.00
98_L 171_L 0.76 0.00
158_F 84_L 0.76 0.00
129_D 30_A 0.75 0.00
30_R 172_E 0.75 0.00
20_G 83_I 0.75 0.00
86_L 172_E 0.75 0.00
64_K 150_L 0.75 0.00
138_V 22_P 0.74 0.00
174_I 18_V 0.74 0.00
139_L 22_P 0.74 0.00
108_W 82_N 0.74 0.00
22_S 78_I 0.74 0.00
29_L 186_S 0.73 0.00
71_I 114_K 0.73 0.00
66_H 173_K 0.73 0.00
93_V 103_E 0.73 0.00
88_N 91_M 0.72 0.00
126_K 151_D 0.72 0.00
29_L 49_L 0.72 0.00
39_E 80_E 0.72 0.00
165_K 22_P 0.72 0.00
77_V 50_S 0.72 0.00
151_I 66_L 0.72 0.00
25_I 182_H 0.72 0.00
136_N 159_F 0.72 0.00
60_L 100_I 0.72 0.00
124_L 109_G 0.72 0.00
153_E 102_P 0.71 0.00
172_R 52_K 0.71 0.00
127_V 168_A 0.71 0.00
109_K 138_L 0.71 0.00
155_L 137_I 0.71 0.00
102_E 62_K 0.71 0.00
19_M 123_V 0.70 0.00
152_K 172_E 0.70 0.00
47_W 83_I 0.70 0.00
176_V 98_L 0.70 0.00
98_L 162_H 0.70 0.00
117_V 169_F 0.70 0.00
176_V 132_I 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.5541 seconds.