May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
PTH - YCHF
UniProt: P0A7D1 - P0ABU2
Length: 557
Sequences: 347
Seq/Len: 0.62
I_Prob: 0.00
PTH - Peptidyl-tRNA hydrolase
Paralog alert: 0.03 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: PTH 		YCHF - Ribosome-binding ATPase YchF
Paralog alert: 0.07 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YCHF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
130_F 357_M 1.43 0.00
143_K 261_L 1.29 0.00
122_S 250_E 1.27 0.00
91_V 119_V 1.22 0.00
17_A 186_E 1.18 0.00
180_G 117_G 1.16 0.00
89_I 314_K 1.16 0.00
25_A 32_F 1.12 0.00
47_G 230_G 1.11 0.00
86_P 310_T 1.11 0.00
91_V 356_V 1.10 0.00
149_F 321_T 1.07 0.00
34_R 112_I 1.04 0.00
67_F 242_A 1.03 0.00
91_V 245_A 1.03 0.00
189_H 125_I 1.02 0.00
118_K 101_G 1.01 0.00
135_I 119_V 1.01 0.00
104_K 63_T 1.01 0.00
99_P 350_I 1.01 0.00
23_A 170_P 1.01 0.00
149_F 251_E 1.00 0.00
104_K 159_K 1.00 0.00
159_Q 360_L 1.00 0.00
68_M 48_D 0.99 0.00
67_F 262_E 0.99 0.00
143_K 238_A 0.99 0.00
39_L 41_T 0.98 0.00
119_D 299_A 0.98 0.00
33_E 144_I 0.98 0.00
86_P 242_A 0.98 0.00
157_S 153_G 0.97 0.00
39_L 32_F 0.97 0.00
152_G 325_E 0.96 0.00
159_Q 157_D 0.96 0.00
154_P 27_I 0.95 0.00
4_K 224_E 0.95 0.00
74_A 218_Y 0.95 0.00
84_I 229_E 0.94 0.00
61_L 257_Q 0.94 0.00
63_V 32_F 0.94 0.00
13_G 263_E 0.94 0.00
59_V 321_T 0.94 0.00
29_D 41_T 0.94 0.00
70_L 112_I 0.94 0.00
163_D 323_S 0.93 0.00
130_F 165_L 0.93 0.00
111_H 255_F 0.93 0.00
114_H 48_D 0.93 0.00
189_H 104_V 0.93 0.00
75_V 109_N 0.92 0.00
5_L 51_L 0.92 0.00
122_S 186_E 0.92 0.00
67_F 4_K 0.92 0.00
129_N 182_D 0.92 0.00
48_Y 111_N 0.91 0.00
44_K 24_K 0.91 0.00
162_I 168_C 0.91 0.00
124_L 327_F 0.90 0.00
3_I 129_N 0.90 0.00
130_F 229_E 0.90 0.00
25_A 46_M 0.90 0.00
15_E 69_E 0.89 0.00
112_G 144_I 0.89 0.00
92_A 89_Q 0.89 0.00
142_D 275_K 0.89 0.00
28_V 338_E 0.89 0.00
119_D 295_I 0.89 0.00
84_I 269_V 0.89 0.00
107_L 224_E 0.89 0.00
117_L 61_Q 0.89 0.00
17_A 55_A 0.88 0.00
67_F 331_K 0.88 0.00
47_G 24_K 0.88 0.00
17_A 66_T 0.88 0.00
54_L 126_E 0.88 0.00
184_A 287_V 0.88 0.00
115_N 312_F 0.87 0.00
82_F 171_Q 0.87 0.00
47_G 229_E 0.87 0.00
122_S 81_S 0.87 0.00
40_R 61_Q 0.87 0.00
149_F 139_T 0.87 0.00
93_H 61_Q 0.86 0.00
87_D 248_D 0.86 0.00
131_H 32_F 0.86 0.00
184_A 113_I 0.86 0.00
190_A 295_I 0.86 0.00
170_A 314_K 0.86 0.00
117_L 100_I 0.86 0.00
67_F 163_A 0.85 0.00
19_T 58_V 0.85 0.00
120_I 166_E 0.85 0.00
183_K 227_A 0.85 0.00
128_P 344_A 0.85 0.00
92_A 290_V 0.84 0.00
95_E 93_N 0.84 0.00
166_I 310_T 0.84 0.00
163_D 331_K 0.84 0.00
137_I 331_K 0.84 0.00
83_R 140_C 0.84 0.00
134_R 38_E 0.84 0.00
119_D 27_I 0.83 0.00
27_F 324_F 0.83 0.00
158_E 194_L 0.83 0.00
142_D 325_E 0.83 0.00
56_G 324_F 0.83 0.00
38_P 227_A 0.83 0.00
26_W 238_A 0.83 0.00
143_K 30_A 0.82 0.00
119_D 97_T 0.82 0.00
122_S 82_K 0.82 0.00
83_R 332_G 0.82 0.00
149_F 168_C 0.81 0.00
32_A 112_I 0.81 0.00
67_F 100_I 0.81 0.00
7_V 138_D 0.81 0.00
16_Y 319_A 0.81 0.00
66_T 82_K 0.81 0.00
86_P 185_A 0.81 0.00
67_F 209_N 0.80 0.00
104_K 92_T 0.80 0.00
26_W 239_A 0.80 0.00
59_V 272_A 0.80 0.00
174_E 112_I 0.80 0.00
184_A 213_F 0.80 0.00
187_R 227_A 0.80 0.00
1_M 175_A 0.80 0.00
74_A 188_K 0.80 0.00
84_I 259_L 0.79 0.00
60_R 140_C 0.79 0.00
118_K 320_Q 0.79 0.00
175_M 142_R 0.79 0.00
179_D 177_M 0.79 0.00
146_V 135_A 0.79 0.00
36_R 218_Y 0.79 0.00
1_M 116_S 0.79 0.00
50_S 58_V 0.78 0.00
104_K 239_A 0.78 0.00
62_L 230_G 0.78 0.00
163_D 93_N 0.78 0.00
7_V 250_E 0.78 0.00
174_E 177_M 0.78 0.00
30_L 243_D 0.78 0.00
75_V 127_V 0.78 0.00
42_E 170_P 0.78 0.00
14_A 192_R 0.77 0.00
165_A 119_V 0.77 0.00
104_K 267_N 0.77 0.00
102_V 217_P 0.77 0.00
75_V 222_V 0.77 0.00
149_F 358_N 0.77 0.00
16_Y 318_R 0.77 0.00
15_E 171_Q 0.77 0.00
99_P 108_E 0.77 0.00
172_C 363_V 0.77 0.00
120_I 200_K 0.77 0.00
129_N 257_Q 0.77 0.00
104_K 101_G 0.77 0.00
143_K 239_A 0.77 0.00
128_P 314_K 0.77 0.00
171_R 223_R 0.76 0.00
45_F 210_E 0.76 0.00
126_N 195_S 0.76 0.00
173_T 164_V 0.76 0.00
149_F 145_H 0.76 0.00
144_N 109_N 0.76 0.00
4_K 194_L 0.76 0.00
152_G 135_A 0.76 0.00
147_V 109_N 0.76 0.00
6_I 152_K 0.76 0.00
44_K 137_L 0.76 0.00
175_M 119_V 0.76 0.00
147_V 63_T 0.76 0.00
176_W 64_L 0.76 0.00
48_Y 196_F 0.76 0.00
103_A 137_L 0.76 0.00
143_K 150_K 0.76 0.00
120_I 109_N 0.75 0.00
178_T 109_N 0.75 0.00
141_G 152_K 0.75 0.00
43_A 248_D 0.75 0.00
110_G 108_E 0.75 0.00
104_K 251_E 0.75 0.00
191_F 202_T 0.75 0.00
152_G 259_L 0.74 0.00
175_M 101_G 0.74 0.00
99_P 126_E 0.74 0.00
192_K 89_Q 0.74 0.00
178_T 192_R 0.74 0.00
29_D 137_L 0.74 0.00
124_L 248_D 0.73 0.00
50_S 334_Q 0.73 0.00
104_K 150_K 0.73 0.00
185_T 303_Q 0.73 0.00
148_G 228_K 0.73 0.00
182_T 227_A 0.73 0.00
173_T 117_G 0.73 0.00
56_G 209_N 0.73 0.00
15_E 190_A 0.73 0.00
95_E 38_E 0.73 0.00
87_D 192_R 0.73 0.00
89_I 253_D 0.73 0.00
139_H 27_I 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.7743 seconds.