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OPENSEQ.org

NUSB - PGPA
UniProt: P0A780 - P18200
Length: 311
Sequences: 188
Seq/Len: 0.65
I_Prob: 0.00

NUSB - N utilization substance protein B
Paralog alert: 0.76 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: NUSB
PGPA - Phosphatidylglycerophosphatase A
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PGPA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
71_S 36_V 1.42 0.00
39_D 42_S 1.37 0.00
34_F 149_I 1.37 0.00
104_I 22_H 1.32 0.00
104_I 87_H 1.31 0.00
34_F 20_P 1.29 0.00
120_H 22_H 1.28 0.00
88_A 76_H 1.19 0.00
97_D 19_N 1.18 0.00
63_D 97_G 1.15 0.00
97_D 24_L 1.14 0.00
21_Q 101_T 1.14 0.00
101_K 82_M 1.12 0.00
48_F 25_A 1.12 0.00
16_A 60_Y 1.12 0.00
56_A 144_I 1.11 0.00
116_A 97_G 1.10 0.00
86_R 97_G 1.09 0.00
129_K 24_L 1.07 0.00
112_K 28_F 1.06 0.00
11_E 152_G 1.05 0.00
107_A 32_L 1.05 0.00
107_A 17_M 1.04 0.00
78_G 136_R 1.01 0.00
19_S 82_M 1.00 0.00
24_Q 95_F 1.00 0.00
6_R 87_H 0.99 0.00
120_H 27_G 0.99 0.00
35_L 73_Y 0.98 0.00
51_L 142_M 0.98 0.00
86_R 116_G 0.97 0.00
17_L 42_S 0.97 0.00
57_T 73_Y 0.97 0.00
109_E 78_T 0.96 0.00
37_E 149_I 0.96 0.00
61_Y 155_S 0.95 0.00
28_A 138_V 0.95 0.00
108_I 26_V 0.95 0.00
21_Q 40_M 0.95 0.00
62_L 99_W 0.95 0.00
109_E 22_H 0.94 0.00
109_E 43_L 0.94 0.00
19_S 81_D 0.94 0.00
34_F 60_Y 0.94 0.00
53_A 48_F 0.94 0.00
101_K 146_I 0.93 0.00
126_V 112_W 0.93 0.00
17_L 74_L 0.93 0.00
103_A 159_L 0.93 0.00
51_L 50_Y 0.93 0.00
25_N 73_Y 0.92 0.00
98_V 59_L 0.92 0.00
74_L 139_H 0.92 0.00
78_G 97_G 0.91 0.00
34_F 25_A 0.91 0.00
17_L 60_Y 0.90 0.00
80_V 45_A 0.90 0.00
29_D 64_V 0.90 0.00
102_V 28_F 0.89 0.00
117_E 101_T 0.89 0.00
81_E 78_T 0.89 0.00
6_R 22_H 0.89 0.00
33_Q 155_S 0.88 0.00
83_A 30_S 0.88 0.00
82_K 67_G 0.88 0.00
107_A 77_Q 0.88 0.00
116_A 113_V 0.88 0.00
3_P 146_I 0.88 0.00
17_L 154_I 0.87 0.00
46_L 132_R 0.87 0.00
88_A 28_F 0.87 0.00
105_N 106_P 0.87 0.00
109_E 81_D 0.87 0.00
33_Q 62_L 0.86 0.00
80_V 140_G 0.86 0.00
47_Y 97_G 0.86 0.00
60_A 100_I 0.85 0.00
130_A 136_R 0.85 0.00
42_D 46_I 0.85 0.00
119_S 157_G 0.85 0.00
19_S 85_H 0.85 0.00
120_H 117_F 0.85 0.00
33_Q 149_I 0.84 0.00
81_E 81_D 0.84 0.00
132_P 21_W 0.84 0.00
8_R 152_G 0.84 0.00
128_D 135_D 0.83 0.00
103_A 17_M 0.83 0.00
120_H 92_W 0.83 0.00
104_I 84_V 0.83 0.00
93_S 49_W 0.83 0.00
122_F 133_W 0.82 0.00
37_E 138_V 0.82 0.00
80_V 56_P 0.82 0.00
12_C 77_Q 0.82 0.00
61_Y 77_Q 0.81 0.00
94_K 152_G 0.81 0.00
131_A 26_V 0.81 0.00
80_V 111_Q 0.81 0.00
4_A 62_L 0.81 0.00
68_P 64_V 0.80 0.00
73_L 98_M 0.80 0.00
108_I 77_Q 0.80 0.00
131_A 105_L 0.80 0.00
48_F 106_P 0.80 0.00
130_A 84_V 0.79 0.00
87_I 73_Y 0.79 0.00
121_K 99_W 0.79 0.00
43_V 88_G 0.79 0.00
114_F 28_F 0.79 0.00
13_A 106_P 0.79 0.00
58_N 132_R 0.79 0.00
38_Q 42_S 0.79 0.00
66_M 142_M 0.79 0.00
86_R 102_L 0.79 0.00
82_K 26_V 0.79 0.00
27_I 101_T 0.79 0.00
49_R 22_H 0.78 0.00
66_M 134_F 0.78 0.00
89_L 125_M 0.78 0.00
75_E 138_V 0.78 0.00
8_R 134_F 0.78 0.00
111_A 81_D 0.78 0.00
134_I 68_I 0.77 0.00
110_L 101_T 0.77 0.00
24_Q 66_L 0.77 0.00
31_E 84_V 0.77 0.00
2_K 69_C 0.77 0.00
104_I 30_S 0.77 0.00
60_A 80_K 0.77 0.00
54_G 47_P 0.76 0.00
49_R 19_N 0.76 0.00
2_K 132_R 0.76 0.00
138_K 69_C 0.76 0.00
44_D 87_H 0.76 0.00
51_L 76_H 0.76 0.00
26_D 74_L 0.76 0.00
136_P 110_W 0.76 0.00
117_E 36_V 0.76 0.00
126_V 32_L 0.76 0.00
95_R 97_G 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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