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OPENSEQ.org

3OAA_H - 3OAA_G
PDB: 3OAA Query Sequences:

Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 422
Sequences: 886
Seq/Len: 2.12
I_Prob: 0.71
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
42_L 55_L 1.61 0.71
68_I 220_R 1.29 0.43
8_V 214_L 1.28 0.42
48_G 4_K 1.19 0.33
66_G 221_R 1.17 0.32
94_A 188_L 1.08 0.24
40_P 205_Y 1.06 0.23
88_D 241_A 1.03 0.21
83_A 143_P 1.03 0.20
78_V 159_Y 1.01 0.19
4_Y 96_K 1.01 0.19
11_A 5_E 0.99 0.18
98_K 159_Y 0.99 0.18
39_A 206_L 0.98 0.17
102_E 171_S 0.97 0.17
70_E 205_Y 0.96 0.17
63_Y 13_V 0.95 0.16
44_A 214_L 0.95 0.15
49_M 169_I 0.94 0.15
63_Y 267_A 0.94 0.15
130_V 171_S 0.94 0.15
27_G 208_E 0.93 0.15
42_L 51_V 0.91 0.13
70_E 47_T 0.91 0.13
23_I 21_K 0.90 0.13
70_E 243_M 0.90 0.13
9_V 230_G 0.89 0.12
10_S 190_L 0.89 0.12
47_P 29_S 0.89 0.12
79_L 187_L 0.89 0.12
66_G 208_E 0.89 0.12
133_L 250_T 0.89 0.12
25_V 211_P 0.88 0.12
136_K 111_Q 0.88 0.12
5_H 153_K 0.87 0.12
131_I 255_S 0.86 0.11
65_S 48_M 0.86 0.11
70_E 25_M 0.85 0.10
40_P 64_H 0.85 0.10
81_D 221_R 0.85 0.10
22_K 15_N 0.84 0.10
45_I 179_S 0.84 0.10
100_K 135_Q 0.84 0.10
20_V 276_L 0.84 0.10
43_T 157_Q 0.84 0.10
52_I 173_K 0.84 0.10
87_Q 9_K 0.84 0.10
89_L 21_K 0.84 0.10
80_A 218_L 0.83 0.10
52_I 11_A 0.83 0.10
46_K 18_K 0.83 0.10
34_I 67_L 0.83 0.10
21_E 102_M 0.83 0.10
76_V 34_S 0.82 0.09
104_H 40_A 0.82 0.09
47_P 95_F 0.82 0.09
68_I 274_Q 0.82 0.09
122_A 239_Q 0.82 0.09
135_K 214_L 0.82 0.09
32_L 244_V 0.82 0.09
83_A 243_M 0.80 0.09
71_V 243_M 0.80 0.09
78_V 55_L 0.80 0.08
10_S 18_K 0.80 0.08
129_R 170_V 0.80 0.08
128_L 99_L 0.79 0.08
100_K 206_L 0.79 0.08
9_V 27_A 0.79 0.08
27_G 81_S 0.79 0.08
42_L 226_Q 0.78 0.08
27_G 241_A 0.78 0.07
48_G 84_R 0.77 0.07
70_E 75_V 0.77 0.07
31_E 223_V 0.77 0.07
9_V 205_Y 0.76 0.07
63_Y 17_Q 0.76 0.07
106_S 108_K 0.76 0.07
66_G 24_E 0.76 0.07
71_V 241_A 0.76 0.07
36_P 223_V 0.76 0.07
27_G 114_L 0.76 0.07
20_V 155_M 0.75 0.07
58_H 248_A 0.75 0.07
127_Q 277_T 0.75 0.07
29_E 186_Q 0.75 0.07
39_A 163_R 0.75 0.07
2_M 87_C 0.74 0.07
24_Q 165_D 0.74 0.07
132_E 241_A 0.74 0.06
24_Q 241_A 0.74 0.06
27_G 45_A 0.74 0.06
15_M 139_M 0.74 0.06
78_V 74_R 0.74 0.06
89_L 173_K 0.74 0.06
7_D 84_R 0.74 0.06
48_G 91_N 0.73 0.06
9_V 232_V 0.73 0.06
23_I 17_Q 0.73 0.06
51_R 176_N 0.73 0.06
42_L 159_Y 0.73 0.06
44_A 52_I 0.73 0.06
36_P 75_V 0.73 0.06
105_I 147_E 0.73 0.06
63_Y 51_V 0.72 0.06
95_M 254_G 0.72 0.06
7_D 256_L 0.72 0.06
11_A 145_L 0.72 0.06
115_A 121_G 0.72 0.06
127_Q 9_K 0.72 0.06
126_A 18_K 0.72 0.06
45_I 200_H 0.72 0.06
98_K 76_G 0.72 0.06
56_H 113_D 0.72 0.06
51_R 175_I 0.72 0.06
68_I 237_S 0.72 0.06
58_H 210_D 0.72 0.06
56_H 102_M 0.72 0.06
62_I 81_S 0.72 0.06
122_A 18_K 0.72 0.06
48_G 43_P 0.72 0.06
65_S 271_S 0.71 0.06
116_Q 169_I 0.71 0.06
101_A 82_T 0.71 0.06
66_G 44_Y 0.71 0.06
40_P 203_W 0.71 0.06
125_I 157_Q 0.71 0.06
58_H 230_G 0.71 0.06
90_D 5_E 0.71 0.06
29_E 250_T 0.71 0.05
84_I 116_M 0.71 0.05
14_Q 284_A 0.70 0.05
104_H 122_V 0.70 0.05
42_L 116_M 0.70 0.05
45_I 211_P 0.70 0.05
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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