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OPENSEQ.org

2Y69_A - 2Y69_B
PDB: 2Y69 Query Sequences:

Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 740
Sequences: 1484
Seq/Len: 2.04
I_Prob: 1.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
228_I 175_I 3.95 1.00
368_D 198_E 2.24 0.99
446_Y 2_A 2.02 0.97
433_S 6_Q 1.90 0.96
368_D 173_D 1.68 0.91
448_M 5_M 1.66 0.91
368_D 171_K 1.61 0.89
318_K 62_E 1.37 0.76
439_Y 205_S 1.36 0.75
440_S 205_S 1.34 0.74
365_V 9_F 1.24 0.64
226_D 178_R 1.18 0.58
231_Q 160_L 1.14 0.53
356_V 27_T 1.11 0.51
427_Q 14_S 1.10 0.49
228_I 152_M 1.06 0.44
279_I 62_E 1.05 0.43
151_L 112_D 1.00 0.37
50_D 203_N 0.99 0.37
278_S 58_A 0.98 0.35
338_M 36_S 0.98 0.35
231_Q 198_E 0.98 0.35
288_A 66_T 0.97 0.34
184_V 192_Y 0.97 0.34
358_A 76_I 0.95 0.32
504_F 76_I 0.95 0.32
436_P 196_C 0.94 0.31
8_S 98_K 0.94 0.31
445_A 2_A 0.93 0.30
465_M 74_I 0.93 0.29
463_A 127_E 0.92 0.28
337_M 99_T 0.92 0.28
444_D 134_R 0.91 0.28
319_V 165_V 0.91 0.27
313_I 75_L 0.91 0.27
352_L 35_S 0.90 0.27
313_I 70_A 0.90 0.27
132_A 154_V 0.88 0.25
128_Y 171_K 0.88 0.24
294_V 180_N 0.87 0.24
84_L 67_I 0.86 0.23
316_G 80_S 0.86 0.23
331_I 74_I 0.86 0.23
143_D 194_G 0.86 0.22
490_N 31_V 0.85 0.22
371_Y 24_H 0.85 0.22
510_V 61_V 0.85 0.21
302_A 85_Y 0.84 0.21
293_T 162_S 0.84 0.21
417_F 42_I 0.84 0.21
482_L 192_Y 0.84 0.21
474_A 6_Q 0.84 0.21
298_V 88_D 0.84 0.21
253_I 112_D 0.84 0.21
188_M 146_M 0.84 0.21
348_T 38_V 0.83 0.20
365_V 164_A 0.83 0.20
230_Y 11_D 0.82 0.20
480_E 5_M 0.82 0.19
339_W 205_S 0.82 0.19
131_L 199_I 0.82 0.19
390_G 155_S 0.81 0.19
508_T 60_E 0.81 0.19
406_D 5_M 0.81 0.18
406_D 217_K 0.81 0.18
138_A 88_D 0.80 0.18
20_L 132_E 0.80 0.18
355_I 6_Q 0.80 0.18
128_Y 198_E 0.80 0.18
285_I 147_E 0.80 0.18
267_F 66_T 0.80 0.18
439_Y 195_Q 0.80 0.17
385_V 9_F 0.80 0.17
138_A 125_T 0.79 0.17
315_T 108_Y 0.79 0.17
228_I 75_L 0.79 0.17
405_N 117_S 0.79 0.17
485_D 217_K 0.79 0.17
509_Y 39_L 0.79 0.16
452_I 7_L 0.78 0.16
476_A 34_I 0.78 0.16
301_R 85_Y 0.78 0.16
278_S 216_L 0.78 0.16
107_S 140_N 0.78 0.16
349_V 31_V 0.78 0.16
214_L 5_M 0.77 0.16
485_D 125_T 0.77 0.16
236_F 161_H 0.77 0.15
294_V 160_L 0.77 0.15
250_F 62_E 0.77 0.15
463_A 97_V 0.77 0.15
488_T 75_L 0.77 0.15
154_V 142_V 0.77 0.15
509_Y 97_V 0.76 0.15
326_L 45_M 0.76 0.15
455_M 189_P 0.75 0.14
262_G 3_Y 0.75 0.14
97_N 62_E 0.75 0.14
369_T 197_S 0.75 0.14
335_P 63_T 0.75 0.14
316_G 69_P 0.75 0.14
136_A 13_T 0.75 0.14
264_K 123_I 0.74 0.13
267_F 62_E 0.74 0.13
373_V 198_E 0.74 0.13
296_M 30_I 0.74 0.13
474_A 217_K 0.74 0.13
283_G 219_F 0.74 0.13
47_L 3_Y 0.73 0.13
484_V 74_I 0.73 0.13
327_H 46_L 0.73 0.13
436_P 161_H 0.73 0.13
390_G 39_L 0.73 0.12
129_P 208_P 0.73 0.12
214_L 192_Y 0.73 0.12
436_P 200_C 0.73 0.12
358_A 87_M 0.72 0.12
452_I 31_V 0.72 0.12
152_A 44_L 0.72 0.12
340_A 8_G 0.72 0.12
455_M 74_I 0.72 0.12
222_A 74_I 0.72 0.12
269_Y 3_Y 0.72 0.12
171_K 157_E 0.72 0.12
486_L 5_M 0.72 0.12
488_T 217_K 0.71 0.12
31_A 123_I 0.71 0.12
476_A 132_E 0.71 0.12
323_L 40_Y 0.71 0.12
31_A 217_K 0.71 0.12
310_I 70_A 0.71 0.11
436_P 158_D 0.71 0.11
488_T 2_A 0.71 0.11
26_G 133_L 0.71 0.11
313_I 214_V 0.71 0.11
100_S 71_I 0.71 0.11
31_A 165_V 0.71 0.11
54_N 199_I 0.70 0.11
402_Y 127_E 0.70 0.11
306_S 81_L 0.70 0.11
484_V 125_T 0.70 0.11
486_L 217_K 0.70 0.11
179_Q 225_S 0.70 0.11
269_Y 142_V 0.70 0.11
28_V 31_V 0.70 0.11
136_A 184_L 0.70 0.11
485_D 124_P 0.70 0.11
510_V 29_M 0.70 0.11
173_P 74_I 0.70 0.11
204_G 22_H 0.69 0.10
230_Y 88_D 0.69 0.10
370_Y 158_D 0.69 0.10
28_V 64_I 0.69 0.10
115_S 44_L 0.69 0.10
471_I 97_V 0.69 0.10
109_L 39_L 0.69 0.10
500_P 2_A 0.69 0.10
78_G 196_C 0.69 0.10
302_A 81_L 0.69 0.10
55_V 76_I 0.69 0.10
222_A 124_P 0.69 0.10
109_L 211_L 0.69 0.10
278_S 31_V 0.69 0.10
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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