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OPENSEQ.org

2D1P_B - 2D1P_C
PDB: 2D1P Query Sequences:

Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 214
Sequences: 216
Seq/Len: 1.01
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
106_L 20_L 1.45 0.01
78_V 3_H 1.42 0.01
42_D 32_D 1.40 0.01
21_G 1_M 1.37 0.01
73_I 14_F 1.32 0.01
7_V 50_A 1.32 0.01
41_A 14_F 1.31 0.01
38_F 31_Q 1.27 0.01
13_H 33_G 1.26 0.01
74_E 23_E 1.26 0.01
78_V 54_V 1.25 0.01
44_V 27_L 1.23 0.01
86_R 79_Y 1.14 0.01
73_I 61_L 1.14 0.01
5_A 31_Q 1.14 0.01
6_F 92_Q 1.12 0.00
36_A 6_H 1.10 0.00
96_V 4_T 1.10 0.00
9_S 17_L 1.09 0.00
111_A 86_T 1.08 0.00
86_R 32_D 1.06 0.00
67_L 92_Q 1.06 0.00
85_E 10_W 1.06 0.00
77_W 50_A 1.06 0.00
41_A 17_L 1.06 0.00
57_L 38_V 1.05 0.00
104_D 66_L 1.05 0.00
95_V 27_L 1.05 0.00
45_F 54_V 1.04 0.00
56_V 63_A 1.04 0.00
60_D 6_H 1.04 0.00
105_A 40_G 1.03 0.00
71_Y 4_T 1.02 0.00
41_A 16_A 1.02 0.00
16_A 31_Q 1.02 0.00
47_L 35_T 1.01 0.00
46_Q 85_L 0.99 0.00
2_K 89_H 0.99 0.00
103_A 19_R 0.98 0.00
40_I 43_Y 0.97 0.00
111_A 55_Y 0.97 0.00
11_A 12_T 0.97 0.00
6_F 1_M 0.96 0.00
7_V 24_G 0.95 0.00
83_L 31_Q 0.95 0.00
4_I 14_F 0.95 0.00
47_L 91_S 0.94 0.00
50_G 45_E 0.94 0.00
32_T 14_F 0.93 0.00
24_A 93_M 0.93 0.00
2_K 8_S 0.92 0.00
63_A 56_A 0.92 0.00
6_F 31_Q 0.91 0.00
118_R 66_L 0.91 0.00
35_L 26_E 0.91 0.00
106_L 58_N 0.91 0.00
65_F 4_T 0.90 0.00
98_A 36_A 0.90 0.00
46_Q 87_V 0.89 0.00
15_T 30_L 0.88 0.00
105_A 24_G 0.88 0.00
76_C 22_S 0.87 0.00
81_A 19_R 0.87 0.00
102_E 55_Y 0.87 0.00
82_S 10_W 0.87 0.00
23_D 86_T 0.86 0.00
55_A 21_L 0.86 0.00
24_A 1_M 0.86 0.00
61_Y 8_S 0.86 0.00
87_G 79_Y 0.86 0.00
27_A 6_H 0.85 0.00
68_L 36_A 0.85 0.00
117_L 27_L 0.85 0.00
111_A 56_A 0.85 0.00
34_D 74_I 0.85 0.00
87_G 24_G 0.84 0.00
113_Y 77_I 0.84 0.00
63_A 28_L 0.84 0.00
88_L 78_D 0.83 0.00
104_D 22_S 0.83 0.00
106_L 89_H 0.83 0.00
86_R 9_P 0.83 0.00
54_D 46_S 0.82 0.00
11_A 40_G 0.82 0.00
52_K 46_S 0.82 0.00
55_A 84_R 0.82 0.00
89_D 27_L 0.82 0.00
80_A 45_E 0.81 0.00
25_L 53_K 0.81 0.00
36_A 7_R 0.81 0.00
85_E 48_R 0.81 0.00
67_L 1_M 0.81 0.00
45_F 75_I 0.81 0.00
50_G 24_G 0.81 0.00
2_K 79_Y 0.80 0.00
107_R 5_L 0.80 0.00
8_F 1_M 0.79 0.00
5_A 1_M 0.79 0.00
55_A 62_I 0.79 0.00
104_D 91_S 0.79 0.00
68_L 8_S 0.79 0.00
64_T 9_P 0.79 0.00
57_L 65_G 0.79 0.00
54_D 87_V 0.79 0.00
45_F 25_D 0.79 0.00
86_R 10_W 0.79 0.00
5_A 6_H 0.79 0.00
52_K 62_I 0.79 0.00
87_G 85_L 0.79 0.00
9_S 33_G 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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