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OPENSEQ.org
orthodb1875540at2
ID: 1680230020 Query Sequence

 Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 622 (544)
Sequences: 10 (8)
Seq/Len: 0.018
Nf(neff/√len): 0.3
HHblits Results: (2016_02)
Sequences per length for each position, AFTER the coverage/gap filter was applied
Legend: If visible, the positions blocked in grey are regions that have > 75% gaps and were automatically trimmed and excluded in the GREMLIN analysis.
Trim query Generate MSA using: Filter MSA GREMLIN
Start: End: E-value: Iterations: Coverage: Remove gaps: Prior:
GREMLIN Results:
  • No predictions exist for 1680230020
  • Not enough sequences to perform GREMLIN analysis on (0.018 < 1).
  • We would recommend increasing the e-value to 1E-4 and/or the number of iterations.
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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