May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YQGA - Uncharacterized protein YqgA
UniProt: Q46831 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12987
Length: 235 (229)
Sequences: 468
Seq/Len: 2.04

YQGA
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
67_A 216_M 4.644 1.00
7_I 136_I 3.925 1.00
126_E 132_P 3.352 1.00
9_A 165_L 2.678 1.00
76_E 214_V 2.389 1.00
11_A 139_S 2.346 1.00
74_L 77_K 2.341 1.00
5_P 168_Q 2.091 0.99
44_G 196_L 2.028 0.99
12_V 164_L 2.026 0.99
49_L 195_G 1.879 0.98
125_N 129_T 1.845 0.98
125_N 131_D 1.825 0.98
69_I 73_C 1.786 0.97
78_G 81_T 1.75 0.97
71_E 215_N 1.705 0.96
204_R 209_K 1.666 0.96
83_V 214_V 1.651 0.95
119_G 167_I 1.598 0.94
28_E 32_V 1.592 0.94
30_I 72_I 1.587 0.94
113_F 146_A 1.584 0.94
41_A 63_T 1.574 0.94
105_N 109_I 1.57 0.94
203_L 208_I 1.564 0.93
102_F 159_V 1.552 0.93
5_P 172_A 1.53 0.92
69_I 222_L 1.509 0.92
49_L 223_A 1.49 0.91
33_S 67_A 1.483 0.91
5_P 126_E 1.481 0.91
37_I 63_T 1.474 0.90
223_A 226_L 1.348 0.84
14_L 143_F 1.335 0.83
40_L 200_A 1.323 0.83
12_V 119_G 1.318 0.82
34_M 144_F 1.316 0.82
16_G 150_A 1.308 0.82
16_G 158_S 1.283 0.80
32_V 36_S 1.281 0.80
38_F 145_T 1.271 0.79
4_G 135_L 1.258 0.78
58_A 226_L 1.25 0.78
4_G 126_E 1.241 0.77
222_L 226_L 1.237 0.76
27_P 30_I 1.233 0.76
53_C 189_D 1.229 0.76
219_A 223_A 1.22 0.75
168_Q 220_L 1.207 0.74
136_I 165_L 1.196 0.73
87_Q 102_F 1.191 0.73
60_V 137_A 1.186 0.72
109_I 149_F 1.172 0.71
106_Y 110_I 1.169 0.71
81_T 89_L 1.167 0.70
76_E 80_N 1.162 0.70
62_A 222_L 1.162 0.70
72_I 205_I 1.158 0.70
9_A 161_S 1.156 0.69
65_L 222_L 1.156 0.69
41_A 60_V 1.147 0.68
124_M 127_G 1.135 0.67
84_A 103_I 1.131 0.67
84_A 87_Q 1.129 0.67
55_N 189_D 1.124 0.66
13_L 158_S 1.116 0.65
77_K 81_T 1.116 0.65
112_L 149_F 1.109 0.65
34_M 167_I 1.099 0.64
18_L 147_M 1.099 0.64
31_R 64_L 1.092 0.63
16_G 180_P 1.085 0.62
211_F 216_M 1.082 0.62
12_V 196_L 1.079 0.62
151_C 162_I 1.078 0.61
124_M 171_L 1.077 0.61
161_S 164_L 1.073 0.61
43_L 202_G 1.072 0.61
133_S 137_A 1.07 0.61
155_I 159_V 1.069 0.60
161_S 165_L 1.066 0.60
37_I 196_L 1.064 0.60
128_M 151_C 1.062 0.60
25_R 148_I 1.061 0.60
63_T 196_L 1.06 0.60
6_F 10_S 1.059 0.59
71_E 213_V 1.054 0.59
123_A 163_P 1.052 0.59
117_G 224_M 1.046 0.58
223_A 227_S 1.045 0.58
9_A 79_V 1.044 0.58
54_A 208_I 1.041 0.57
9_A 75_L 1.038 0.57
111_V 198_L 1.038 0.57
121_F 134_I 1.033 0.57
7_I 139_S 1.029 0.56
199_L 202_G 1.029 0.56
110_I 160_I 1.026 0.56
170_T 174_A 1.024 0.56
195_G 201_T 1.023 0.55
133_S 166_I 1.02 0.55
29_R 71_E 1.017 0.55
47_I 68_L 1.013 0.54
48_L 51_V 1.01 0.54
196_L 199_L 1.009 0.54
79_V 214_V 1.009 0.54
197_L 219_A 1.008 0.54
68_L 101_S 1.008 0.54
59_M 193_V 1.007 0.54
146_A 150_A 1.004 0.53
37_I 67_A 1.001 0.53
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3hfwA10.255327.90.959Contact Map0.659
1t5jA10.263820.30.962Contact Map0.341
4eneA20.39576.10.97Contact Map0.172
2nwlA30.68094.90.971Contact Map0.169
3nd0A20.42134.60.971Contact Map0.293
2pcoA10.10642.70.974Contact Map0.389
3lw5I10.09362.70.974Contact Map0.167
2gfpA20.5832.60.975Contact Map0.178
4h44E10.13192.50.975Contact Map0.647
1peiA10.10212.10.976Contact Map0.307

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0433 seconds.