OPENSEQ.org - YBFQ - ECOLI GREMLIN

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YBFQ - Putative defective transposase YbfQ

UniProt:	Q2EEQ8	Sequence MELKKLMEHISITPDYRQAWKVVHKLSDILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSQGKIT	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG14419
Length:	84 (81)
Sequences:	229
Seq/Len:	2.83

YBFQ
Paralog alert: 0.66 [within 20: 0.15] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
73_T	76_R	3.219	1.00
32_L	51_G	2.177	1.00
18_Q	21_K	2.079	1.00
48_E	68_I	1.98	1.00
10_I	13_T	1.829	0.99
32_L	55_L	1.8	0.99
32_L	64_F	1.795	0.99
31_L	57_F	1.748	0.99
18_Q	22_V	1.74	0.98
36_A	41_A	1.624	0.97
19_A	22_V	1.598	0.97
55_L	59_K	1.566	0.96
6_L	26_L	1.558	0.96
28_D	64_F	1.425	0.93
24_H	65_E	1.399	0.92
46_D	73_T	1.355	0.91
74_I	78_V	1.311	0.89
31_L	61_Y	1.309	0.89
28_D	59_K	1.28	0.87
44_W	50_F	1.259	0.86
6_L	30_L	1.23	0.84
64_F	67_G	1.223	0.83
25_K	28_D	1.223	0.83
41_A	47_I	1.218	0.83
6_L	10_I	1.203	0.82
26_L	77_V	1.172	0.80
13_T	79_S	1.166	0.79
51_G	68_I	1.164	0.79
44_W	78_V	1.15	0.78
20_W	54_H	1.144	0.77
31_L	35_C	1.135	0.77
36_A	51_G	1.127	0.76
33_T	37_V	1.118	0.75
29_I	77_V	1.118	0.75
73_T	77_V	1.113	0.75
28_D	63_D	1.086	0.72
24_H	68_I	1.074	0.71
48_E	52_E	1.055	0.69
7_M	14_P	1.054	0.69
32_L	47_I	1.048	0.68
33_T	74_I	1.04	0.67
34_I	54_H	1.015	0.65
8_E	46_D	1.014	0.64
21_K	79_S	1.007	0.64
75_A	79_S	1.002	0.63

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
2jqtA	1	0.3452	18.3	0.908	Contact Map	0.393
3ol3A	2	0.5119	12.9	0.914	Contact Map	0.414
3vz9B	1	0.5119	10.2	0.918	Contact Map	0.072
4icgC	2	0.4167	10	0.918	Contact Map	0.597
3k50A	1	0.5476	8.6	0.92	Contact Map	0.303
2yicA	4	0.9881	8	0.922	Contact Map	0.192
2kvcA	1	0.4524	7.9	0.922	Contact Map	0.487
2xt6A	2	0.9881	6.9	0.924	Contact Map	0.146
1rxwA	1	0.9881	6.2	0.925	Contact Map	0.252
2yiuB	2	0.6429	5.8	0.926	Contact Map	0.471

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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