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OPENSEQ.org
YBBN - Uncharacterized protein YbbN
UniProt: P77395 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13261
Length: 284 (281)
Sequences: 701
Seq/Len: 2.49
YBBN
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
62_D 65_A 5.201 1.00
231_R 234_E 3.969 1.00
129_N 132_D 3.59 1.00
212_N 215_D 3.183 1.00
51_Q 103_R 3.135 1.00
9_I 59_A 3.014 1.00
168_E 194_K 2.923 1.00
217_A 221_Q 2.69 1.00
33_E 62_D 2.608 1.00
47_S 99_E 2.544 1.00
81_V 93_F 2.3 1.00
11_E 68_M 2.145 1.00
29_Y 35_S 2.075 1.00
44_I 99_E 2.036 0.99
35_S 38_C 2.027 0.99
163_R 166_D 1.982 0.99
34_R 37_H 1.862 0.99
214_E 245_K 1.853 0.99
144_S 147_N 1.848 0.99
168_E 172_K 1.843 0.99
208_Q 215_D 1.813 0.99
34_R 39_L 1.739 0.98
48_L 56_F 1.73 0.98
46_E 60_K 1.73 0.98
49_A 56_F 1.727 0.98
47_S 51_Q 1.706 0.98
32_S 37_H 1.7 0.98
29_Y 60_K 1.688 0.97
29_Y 38_C 1.664 0.97
8_N 60_K 1.636 0.97
120_Q 124_L 1.635 0.97
29_Y 37_H 1.626 0.97
32_S 35_S 1.611 0.96
241_G 245_K 1.588 0.96
29_Y 34_R 1.585 0.96
101_A 104_A 1.583 0.96
35_S 43_P 1.58 0.96
34_R 43_P 1.577 0.96
44_I 102_I 1.577 0.96
274_K 278_Q 1.572 0.96
37_H 43_P 1.566 0.95
35_S 60_K 1.542 0.95
99_E 103_R 1.539 0.95
74_G 82_Y 1.539 0.95
82_Y 92_G 1.539 0.95
35_S 39_L 1.513 0.94
32_S 43_P 1.498 0.94
123_Q 127_E 1.49 0.94
41_L 81_V 1.478 0.93
97_Q 101_A 1.471 0.93
34_R 38_C 1.451 0.92
39_L 60_K 1.44 0.92
41_L 93_F 1.438 0.92
153_L 284_Y 1.427 0.92
63_C 78_I 1.427 0.92
215_D 218_L 1.421 0.91
52_Y 56_F 1.404 0.91
243_L 279_L 1.398 0.90
34_R 64_D 1.388 0.90
29_Y 43_P 1.378 0.90
216_A 242_H 1.378 0.90
219_A 238_L 1.377 0.90
34_R 60_K 1.373 0.89
104_A 107_D 1.371 0.89
48_L 103_R 1.37 0.89
38_C 43_P 1.37 0.89
15_Q 19_E 1.354 0.88
206_Q 226_L 1.339 0.88
137_L 153_L 1.324 0.87
83_L 109_V 1.32 0.87
33_E 78_I 1.289 0.85
258_F 262_L 1.287 0.85
206_Q 209_V 1.276 0.84
29_Y 32_S 1.269 0.84
130_Y 157_T 1.256 0.83
119_Q 123_Q 1.249 0.82
20_Q 57_I 1.226 0.81
204_Q 208_Q 1.221 0.80
29_Y 42_T 1.213 0.80
236_L 275_Y 1.203 0.79
38_C 60_K 1.201 0.79
32_S 39_L 1.199 0.79
48_L 106_L 1.192 0.78
32_S 64_D 1.189 0.78
36_Q 43_P 1.185 0.78
233_E 274_K 1.185 0.78
250_A 253_Q 1.181 0.77
220_T 242_H 1.176 0.77
68_M 72_Q 1.159 0.75
121_A 128_S 1.156 0.75
69_I 89_P 1.117 0.71
124_L 132_D 1.105 0.70
98_P 101_A 1.101 0.70
31_W 38_C 1.092 0.69
222_L 226_L 1.087 0.68
33_E 39_L 1.081 0.68
257_T 260_E 1.078 0.67
140_A 150_I 1.078 0.67
207_Q 211_E 1.075 0.67
121_A 137_L 1.073 0.67
96_P 102_I 1.069 0.67
111_P 114_E 1.067 0.66
248_T 252_G 1.062 0.66
252_G 255_R 1.057 0.65
27_L 106_L 1.055 0.65
29_Y 39_L 1.049 0.64
14_L 69_I 1.048 0.64
233_E 271_L 1.046 0.64
82_Y 89_P 1.043 0.64
42_T 60_K 1.037 0.63
37_H 60_K 1.034 0.63
179_Q 187_V 1.021 0.61
240_F 278_Q 1.02 0.61
134_L 138_K 1.017 0.61
166_D 169_A 1.013 0.60
120_Q 123_Q 1.011 0.60
116_L 119_Q 1.011 0.60
249_A 254_T 1.01 0.60
10_N 13_N 1.01 0.60
67_Q 71_A 1.009 0.60
206_Q 210_A 1.007 0.60
81_V 98_P 1.006 0.60
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3qouA10.99651000.533Contact Map0.599
2qc7A20.732499.90.722Contact Map0.427
3bj5A10.447299.90.724Contact Map0.368
2c0gA20.718399.90.732Contact Map0.461
3apoA10.426199.90.734Contact Map0.498
2qsiA20.436699.90.734Contact Map0.457
1thxA10.387399.90.735Contact Map0.517
2qgvA100.426199.90.737Contact Map0.503
2av4A10.464899.90.738Contact Map0.52
3apqA20.41299.90.739Contact Map0.456
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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