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OPENSEQ.org
RNFB - Electron transport complex protein RnfB
UniProt: P77223 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13934
Length: 192 (185)
Sequences: 555
Seq/Len: 3.00
RNFB
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
41_D 58_R 3.293 1.00
130_D 133_V 2.886 1.00
79_E 83_L 2.516 1.00
38_E 58_R 2.5 1.00
134_G 140_H 2.465 1.00
43_I 88_L 2.412 1.00
60_Y 73_R 2.305 1.00
143_M 146_L 2.157 1.00
27_R 30_A 2.014 1.00
133_V 143_M 1.879 0.99
36_V 65_S 1.856 0.99
70_K 94_Q 1.833 0.99
55_P 59_P 1.826 0.99
64_I 89_L 1.813 0.99
112_I 162_I 1.792 0.99
128_P 152_L 1.754 0.99
113_D 163_S 1.691 0.98
97_D 100_A 1.66 0.98
60_Y 64_I 1.655 0.98
60_Y 76_P 1.635 0.98
113_D 116_N 1.623 0.98
111_V 165_Q 1.62 0.98
58_R 62_E 1.586 0.97
179_N 182_P 1.511 0.96
101_Q 104_T 1.401 0.93
40_I 88_L 1.388 0.93
184_R 187_P 1.374 0.92
118_I 159_T 1.346 0.91
73_R 97_D 1.302 0.89
68_G 91_V 1.263 0.87
97_D 101_Q 1.231 0.85
24_Y 28_R 1.208 0.84
151_N 164_L 1.179 0.82
125_Q 156_P 1.175 0.81
106_A 168_A 1.172 0.81
62_E 67_N 1.165 0.81
37_V 65_S 1.155 0.80
171_P 187_P 1.152 0.80
71_I 89_L 1.149 0.79
154_V 164_L 1.135 0.78
22_L 56_G 1.133 0.78
18_F 23_G 1.126 0.77
99_E 187_P 1.125 0.77
126_A 156_P 1.124 0.77
43_I 85_I 1.121 0.77
83_L 87_E 1.118 0.77
76_P 149_G 1.116 0.77
77_G 82_M 1.11 0.76
40_I 64_I 1.108 0.76
71_I 91_V 1.1 0.75
64_I 88_L 1.097 0.75
40_I 43_I 1.092 0.74
80_A 84_K 1.089 0.74
181_I 185_I 1.08 0.73
9_A 17_A 1.078 0.73
172_D 177_D 1.071 0.72
5_W 9_A 1.069 0.72
114_E 141_T 1.066 0.72
113_D 122_K 1.063 0.71
183_V 186_I 1.062 0.71
55_P 109_V 1.056 0.71
172_D 187_P 1.053 0.70
38_E 41_D 1.052 0.70
7_A 25_A 1.049 0.70
75_A 85_I 1.047 0.70
126_A 152_L 1.047 0.70
73_R 76_P 1.045 0.70
32_E 35_P 1.036 0.69
75_A 96_L 1.034 0.68
124_I 133_V 1.032 0.68
29_F 37_V 1.032 0.68
112_I 140_H 1.031 0.68
16_L 62_E 1.023 0.67
68_G 109_V 1.017 0.67
59_P 63_A 1.016 0.66
14_L 18_F 1.016 0.66
8_V 11_V 1.012 0.66
177_D 185_I 1.012 0.66
172_D 175_K 1.012 0.66
128_P 148_T 1.01 0.66
60_Y 75_A 1.01 0.66
171_P 175_K 1.009 0.66
100_A 104_T 1.009 0.66
34_D 99_E 1.008 0.66
180_T 183_V 1.005 0.65
76_P 128_P 1.005 0.65
129_V 148_T 1.003 0.65
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4djdC20.781299.60.77Contact Map0.298
2h9aA10.796999.60.772Contact Map0.07
3zfsB10.760499.30.813Contact Map0.084
1gteA40.927199.20.819Contact Map0.348
2zvsA30.406299.20.82Contact Map0.5
1iqzA10.364699.20.822Contact Map0.49
3gyxB60.437599.10.826Contact Map0.582
2v2kA20.427199.10.828Contact Map0.405
1jnrB20.442799.10.829Contact Map0.571
2fgoA10.395899.10.829Contact Map0.407
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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