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OPENSEQ.org
YFGJ - Uncharacterized protein YfgJ
UniProt: P76575 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14206
Length: 71 (70)
Sequences: 106
Seq/Len: 1.51
YFGJ
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
38_H 67_E 1.954 0.98
13_D 27_F 1.932 0.97
32_A 63_K 1.865 0.97
3_L 30_M 1.751 0.95
10_H 23_S 1.704 0.94
20_R 27_F 1.649 0.92
12_L 53_F 1.573 0.90
36_D 65_R 1.536 0.88
50_V 64_K 1.5 0.86
3_L 70_L 1.453 0.84
23_S 56_H 1.38 0.79
22_R 28_I 1.345 0.77
3_L 14_Q 1.336 0.76
18_H 36_D 1.279 0.72
3_L 19_A 1.26 0.70
43_V 57_G 1.248 0.69
45_K 50_V 1.239 0.68
7_Q 25_G 1.223 0.67
6_P 46_A 1.22 0.66
6_P 63_K 1.218 0.66
40_P 57_G 1.191 0.64
12_L 42_Q 1.142 0.59
9_Q 43_V 1.125 0.57
27_F 31_K 1.118 0.56
7_Q 16_N 1.108 0.55
25_G 29_E 1.105 0.55
2_E 36_D 1.091 0.54
30_M 70_L 1.073 0.52
42_Q 55_Q 1.072 0.52
40_P 55_Q 1.062 0.51
64_K 67_E 1.06 0.50
39_Q 64_K 1.047 0.49
39_Q 56_H 1.045 0.49
44_L 48_G 1.038 0.48
45_K 61_I 1.034 0.48
4_H 25_G 1.027 0.47
43_V 59_G 1.014 0.46
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2jneA111000.036Contact Map0.214
2jrpA111000.082Contact Map0.171
2f42A10.957772.80.876Contact Map0.304
3vk6A10.985969.60.879Contact Map0.02
2lcqA10.676164.40.883Contact Map0.113
3mpxA10.845162.20.884Contact Map
1k3xA10.366257.60.888Contact Map0.461
3u6pA10.366257.50.888Contact Map0.32
4esjA20.929656.80.888Contact Map0.159
4g9iA60.9859560.889Contact Map0.093
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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