| UniProt: | P76356 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG14308 | ||
| Length: | 167 (132) | ||
| Sequences: | 3817 | ||
| Seq/Len: | 28.92 |
| YOEA
Paralog alert: 0.86 [within 20: 0.13] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 137_L | 162_F | 3.67 | 1.00 | |
| 63_D | 66_T | 3.441 | 1.00 | |
| 64_Q | 68_Q | 3.389 | 1.00 | |
| 64_Q | 165_K | 3.293 | 1.00 | |
| 139_R | 163_I | 3.126 | 1.00 | |
| 138_E | 165_K | 2.981 | 1.00 | |
| 82_I | 142_V | 2.673 | 1.00 | |
| 138_E | 166_K | 2.667 | 1.00 | |
| 60_Q | 144_K | 2.667 | 1.00 | |
| 67_L | 78_N | 2.438 | 1.00 | |
| 112_I | 117_V | 2.307 | 1.00 | |
| 74_S | 77_D | 2.295 | 1.00 | |
| 38_E | 41_L | 2.243 | 1.00 | |
| 65_Q | 68_Q | 2.127 | 1.00 | |
| 109_L | 116_E | 2.079 | 1.00 | |
| 133_D | 136_A | 2.05 | 1.00 | |
| 61_V | 141_E | 2.002 | 1.00 | |
| 65_Q | 69_N | 1.991 | 1.00 | |
| 112_I | 164_T | 1.931 | 1.00 | |
| 116_E | 154_Q | 1.896 | 1.00 | |
| 51_N | 54_E | 1.74 | 1.00 | |
| 85_V | 100_I | 1.665 | 1.00 | |
| 78_N | 134_E | 1.641 | 1.00 | |
| 61_V | 139_R | 1.605 | 1.00 | |
| 143_V | 147_Y | 1.584 | 1.00 | |
| 64_Q | 138_E | 1.571 | 1.00 | |
| 84_G | 144_K | 1.567 | 1.00 | |
| 72_N | 78_N | 1.553 | 1.00 | |
| 111_L | 161_N | 1.519 | 1.00 | |
| 70_S | 81_D | 1.492 | 1.00 | |
| 99_R | 104_A | 1.491 | 1.00 | |
| 66_T | 69_N | 1.417 | 1.00 | |
| 73_A | 77_D | 1.415 | 1.00 | |
| 98_I | 160_V | 1.39 | 0.99 | |
| 113_D | 164_T | 1.369 | 0.99 | |
| 104_A | 107_R | 1.362 | 0.99 | |
| 44_T | 163_I | 1.33 | 0.99 | |
| 109_L | 155_A | 1.33 | 0.99 | |
| 103_E | 107_R | 1.22 | 0.98 | |
| 62_I | 78_N | 1.202 | 0.98 | |
| 141_E | 161_N | 1.202 | 0.98 | |
| 111_L | 163_I | 1.163 | 0.97 | |
| 100_I | 158_G | 1.148 | 0.97 | |
| 75_I | 162_F | 1.146 | 0.97 | |
| 46_N | 50_S | 1.137 | 0.97 | |
| 103_E | 157_G | 1.132 | 0.97 | |
| 151_Y | 159_I | 1.062 | 0.95 | |
| 110_I | 128_V | 1.052 | 0.95 | |
| 140_V | 162_F | 1.033 | 0.94 | |
| 136_A | 164_T | 1.029 | 0.94 | |
| 85_V | 98_I | 1.026 | 0.94 | |
| 77_D | 80_Q | 1.026 | 0.94 | |
| 138_E | 163_I | 1.022 | 0.93 | |
| 72_N | 81_D | 1.02 | 0.93 | |
| 112_I | 137_L | 1.012 | 0.93 | |
| 83_P | 144_K | 1.012 | 0.93 | |
| 58_T | 144_K | 1.002 | 0.92 | |
| 114_G | 161_N | 1.002 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3fhhA | 1 | 0.7605 | 100 | 0.186 | Contact Map | 0.645 |
| 3v8xA | 1 | 0.9222 | 100 | 0.205 | Contact Map | 0.701 |
| 2hdiA | 1 | 0.7964 | 100 | 0.208 | Contact Map | 0.84 |
| 1fepA | 1 | 0.8084 | 100 | 0.246 | Contact Map | 0.72 |
| 2gufA | 1 | 0.7964 | 100 | 0.251 | Contact Map | 0.843 |
| 4epaA | 1 | 0.7904 | 100 | 0.263 | Contact Map | 0.692 |
| 1qfgA | 1 | 0.9162 | 100 | 0.268 | Contact Map | 0.742 |
| 1xkwA | 1 | 0.7665 | 100 | 0.279 | Contact Map | 0.839 |
| 4b7oA | 1 | 0.9521 | 100 | 0.281 | Contact Map | 0.698 |
| 3qlbA | 2 | 0.9401 | 100 | 0.281 | Contact Map | 0.805 |
Sequence Conservation (Image Generated using WebLogo v3)