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RNFD - Electron transport complex protein RnfD
UniProt: P76182 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13936
Length: 352 (342)
Sequences: 899
Seq/Len: 2.63

RNFD
Paralog alert: 0.32 [within 20: 0.01] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
109_A 126_I 3.639 1.00
306_L 331_A 3.403 1.00
244_I 287_L 3.173 1.00
303_F 307_A 2.949 1.00
57_A 107_I 2.893 1.00
57_A 103_V 2.842 1.00
23_L 233_W 2.825 1.00
101_G 131_L 2.762 1.00
251_T 305_A 2.696 1.00
252_L 279_T 2.513 1.00
311_V 324_V 2.449 1.00
53_S 99_V 2.447 1.00
49_L 95_W 2.392 1.00
34_A 226_A 2.346 1.00
50_A 98_V 2.267 1.00
32_I 47_I 2.207 1.00
231_G 284_F 2.206 1.00
85_L 127_G 2.155 1.00
23_L 237_Q 2.097 1.00
299_G 338_I 2.073 1.00
247_S 304_G 2.068 1.00
78_A 106_V 2.066 1.00
84_L 281_L 2.001 0.99
28_A 281_L 1.99 0.99
309_L 313_L 1.976 0.99
302_I 338_I 1.953 0.99
104_F 108_I 1.908 0.99
93_A 97_M 1.897 0.99
103_V 107_I 1.89 0.99
22_L 76_N 1.864 0.99
28_A 83_L 1.839 0.99
35_Q 219_G 1.812 0.99
296_T 299_G 1.783 0.99
95_W 99_V 1.777 0.98
104_F 126_I 1.768 0.98
49_L 99_V 1.764 0.98
233_W 237_Q 1.751 0.98
287_L 307_A 1.745 0.98
243_H 297_N 1.743 0.98
89_I 93_A 1.736 0.98
248_F 324_V 1.735 0.98
48_L 52_V 1.709 0.98
46_Q 98_V 1.678 0.98
34_A 38_F 1.651 0.97
282_G 324_V 1.641 0.97
231_G 245_P 1.619 0.97
255_C 309_L 1.616 0.97
244_I 293_A 1.598 0.96
132_L 324_V 1.597 0.96
34_A 222_W 1.593 0.96
251_T 255_C 1.587 0.96
246_L 250_V 1.561 0.96
27_A 233_W 1.548 0.96
133_I 326_F 1.546 0.96
76_N 79_L 1.537 0.95
211_Y 225_L 1.531 0.95
154_G 157_D 1.524 0.95
53_S 57_A 1.515 0.95
253_A 274_L 1.512 0.95
129_V 329_L 1.508 0.95
31_G 227_W 1.508 0.95
33_A 36_L 1.506 0.95
301_L 305_A 1.477 0.94
85_L 101_G 1.47 0.94
97_M 138_Q 1.458 0.93
25_L 79_L 1.447 0.93
129_V 133_I 1.433 0.92
88_S 325_A 1.433 0.92
32_I 87_V 1.427 0.92
54_A 102_T 1.419 0.92
116_L 291_V 1.403 0.91
245_P 284_F 1.402 0.91
228_L 232_V 1.394 0.91
307_A 324_V 1.392 0.91
227_W 284_F 1.391 0.91
25_L 83_L 1.384 0.91
248_F 307_A 1.379 0.90
51_S 79_L 1.373 0.90
313_L 317_F 1.371 0.90
250_V 301_L 1.367 0.90
314_I 320_Y 1.366 0.90
304_G 308_G 1.362 0.90
29_V 33_A 1.361 0.90
53_S 102_T 1.328 0.88
252_L 312_W 1.316 0.88
55_L 79_L 1.314 0.87
93_A 98_V 1.31 0.87
229_A 233_W 1.303 0.87
121_F 333_I 1.296 0.86
248_F 311_V 1.281 0.86
263_S 267_L 1.273 0.85
242_W 246_L 1.261 0.84
105_A 127_G 1.26 0.84
22_L 26_L 1.256 0.84
23_L 26_L 1.23 0.82
210_I 276_S 1.23 0.82
232_V 235_L 1.228 0.82
247_S 250_V 1.228 0.82
287_L 304_G 1.225 0.82
125_M 328_V 1.22 0.82
128_Y 322_D 1.215 0.81
344_P 348_G 1.215 0.81
249_L 283_A 1.207 0.81
25_L 80_L 1.181 0.79
239_A 290_P 1.178 0.78
26_L 229_A 1.172 0.78
303_F 306_L 1.167 0.77
259_G 312_W 1.165 0.77
125_M 286_I 1.162 0.77
224_N 231_G 1.156 0.77
29_V 60_L 1.151 0.76
32_I 83_L 1.127 0.74
232_V 236_W 1.125 0.74
23_L 239_A 1.125 0.74
61_V 107_I 1.119 0.73
55_L 59_A 1.119 0.73
295_T 338_I 1.117 0.73
109_A 127_G 1.113 0.73
263_S 266_T 1.108 0.72
235_L 245_P 1.098 0.71
260_W 269_A 1.097 0.71
33_A 37_W 1.094 0.71
21_M 24_V 1.093 0.71
296_T 335_V 1.091 0.70
302_I 342_T 1.082 0.70
323_G 337_L 1.081 0.69
47_I 87_V 1.079 0.69
211_Y 228_L 1.078 0.69
55_L 73_L 1.07 0.68
227_W 281_L 1.069 0.68
32_I 36_L 1.069 0.68
212_S 225_L 1.069 0.68
128_Y 286_I 1.062 0.67
320_Y 326_F 1.06 0.67
235_L 284_F 1.056 0.67
88_S 125_M 1.054 0.67
195_S 205_I 1.053 0.67
201_S 204_Q 1.053 0.67
77_S 116_L 1.048 0.66
57_A 102_T 1.047 0.66
31_G 87_V 1.044 0.66
251_T 309_L 1.044 0.66
213_G 221_Q 1.037 0.65
303_F 334_T 1.035 0.65
131_L 139_M 1.026 0.64
279_T 324_V 1.025 0.63
31_G 230_G 1.024 0.63
52_V 253_A 1.024 0.63
249_L 284_F 1.023 0.63
88_S 286_I 1.023 0.63
34_A 214_I 1.02 0.63
213_G 217_G 1.017 0.63
121_F 126_I 1.017 0.63
181_D 187_T 1.016 0.62
192_F 268_A 1.016 0.62
62_L 69_V 1.004 0.61
241_R 300_R 1.004 0.61
224_N 280_M 1.001 0.61
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
1lnqA80.28698.40.978Contact Map0.276
4gx0A40.30116.10.979Contact Map0.185
2l0eA10.09093.80.981Contact Map1
4humA10.22442.70.982Contact Map0.3
3nd0A20.18752.60.983Contact Map0
2cfqA10.22162.50.983Contact Map0.499
4b19A10.08522.50.983Contact Map0.317
3mktA20.22162.20.983Contact Map0.472
3dl8G20.207420.984Contact Map0.014
4i0uA100.18181.90.984Contact Map0.697

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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