| UniProt: | P75874 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13723 | ||
| Length: | 137 (134) | ||
| Sequences: | 896 | ||
| Seq/Len: | 6.69 |
| YCCU
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 63_T | 66_D | 3.353 | 1.00 | |
| 88_Q | 112_L | 3.143 | 1.00 | |
| 62_G | 66_D | 2.608 | 1.00 | |
| 35_Y | 130_I | 2.599 | 1.00 | |
| 42_H | 58_Q | 2.585 | 1.00 | |
| 37_L | 58_Q | 2.417 | 1.00 | |
| 87_A | 98_L | 2.389 | 1.00 | |
| 67_V | 71_V | 2.241 | 1.00 | |
| 15_T | 42_H | 2.117 | 1.00 | |
| 102_L | 128_I | 2.11 | 1.00 | |
| 111_V | 115_D | 2.06 | 1.00 | |
| 61_Y | 68_P | 2.05 | 1.00 | |
| 24_K | 27_R | 1.83 | 1.00 | |
| 34_K | 38_D | 1.824 | 1.00 | |
| 42_H | 69_E | 1.814 | 1.00 | |
| 84_W | 106_N | 1.812 | 1.00 | |
| 21_A | 33_M | 1.781 | 1.00 | |
| 65_A | 89_E | 1.778 | 1.00 | |
| 87_A | 109_A | 1.763 | 1.00 | |
| 7_A | 11_T | 1.709 | 1.00 | |
| 13_T | 73_M | 1.688 | 1.00 | |
| 65_A | 92_A | 1.604 | 1.00 | |
| 8_G | 12_S | 1.601 | 1.00 | |
| 83_A | 100_M | 1.581 | 1.00 | |
| 111_V | 114_R | 1.54 | 0.99 | |
| 55_L | 60_G | 1.538 | 0.99 | |
| 9_I | 97_T | 1.509 | 0.99 | |
| 13_T | 97_T | 1.47 | 0.99 | |
| 76_V | 100_M | 1.466 | 0.99 | |
| 3_E | 132_R | 1.439 | 0.99 | |
| 44_I | 69_E | 1.435 | 0.99 | |
| 73_M | 126_P | 1.432 | 0.99 | |
| 110_A | 120_V | 1.373 | 0.98 | |
| 64_L | 93_I | 1.329 | 0.98 | |
| 54_T | 59_K | 1.329 | 0.98 | |
| 46_V | 67_V | 1.322 | 0.98 | |
| 110_A | 122_M | 1.289 | 0.97 | |
| 91_I | 112_L | 1.279 | 0.97 | |
| 15_T | 69_E | 1.266 | 0.97 | |
| 91_I | 116_A | 1.262 | 0.97 | |
| 16_I | 126_P | 1.253 | 0.97 | |
| 50_V | 55_L | 1.237 | 0.96 | |
| 37_L | 56_L | 1.236 | 0.96 | |
| 37_L | 43_V | 1.221 | 0.96 | |
| 105_I | 123_D | 1.211 | 0.96 | |
| 22_S | 29_S | 1.2 | 0.95 | |
| 23_D | 50_V | 1.191 | 0.95 | |
| 19_V | 74_V | 1.175 | 0.95 | |
| 70_K | 96_K | 1.161 | 0.94 | |
| 84_W | 112_L | 1.137 | 0.93 | |
| 79_N | 82_A | 1.126 | 0.93 | |
| 31_R | 127_A | 1.122 | 0.93 | |
| 124_R | 129_E | 1.121 | 0.93 | |
| 129_E | 132_R | 1.112 | 0.92 | |
| 70_K | 93_I | 1.095 | 0.92 | |
| 75_D | 126_P | 1.095 | 0.92 | |
| 76_V | 98_L | 1.09 | 0.91 | |
| 85_G | 88_Q | 1.076 | 0.91 | |
| 96_K | 119_N | 1.065 | 0.90 | |
| 97_T | 119_N | 1.051 | 0.89 | |
| 19_V | 90_A | 1.051 | 0.89 | |
| 84_W | 88_Q | 1.046 | 0.89 | |
| 95_A | 118_L | 1.045 | 0.89 | |
| 87_A | 113_A | 1.044 | 0.89 | |
| 16_I | 73_M | 1.041 | 0.89 | |
| 30_Y | 56_L | 1.027 | 0.88 | |
| 3_E | 133_L | 1.001 | 0.86 | |
| 82_A | 85_G | 1 | 0.86 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3ff4A | 1 | 0.8905 | 99.9 | 0.446 | Contact Map | 0.507 |
| 2csuA | 2 | 0.9416 | 99.9 | 0.503 | Contact Map | 0.66 |
| 2duwA | 1 | 1 | 99.9 | 0.519 | Contact Map | 0.643 |
| 1iukA | 1 | 1 | 99.9 | 0.536 | Contact Map | 0.743 |
| 2d59A | 1 | 0.9854 | 99.8 | 0.574 | Contact Map | 0.875 |
| 1y81A | 1 | 0.9854 | 99.8 | 0.577 | Contact Map | 0.655 |
| 3pffA | 1 | 0.9489 | 99.7 | 0.621 | Contact Map | 0.33 |
| 2fp4A | 1 | 0.9781 | 99.6 | 0.65 | Contact Map | 0.417 |
| 2yv1A | 1 | 0.9781 | 99.5 | 0.657 | Contact Map | 0.494 |
| 2yv2A | 1 | 0.9781 | 99.4 | 0.676 | Contact Map | 0.541 |
Sequence Conservation (Image Generated using WebLogo v3)