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OPENSEQ.org
YBJG - Putative undecaprenyl-diphosphatase YbjG
UniProt: P75806 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13676
Length: 198 (170)
Sequences: 2330
Seq/Len: 13.71
YBJG
Paralog alert: 0.42 [within 20: 0.02] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
6_N 80_H 3.617 1.00
114_L 161_C 3.05 1.00
136_A 154_L 2.783 1.00
110_F 154_L 2.614 1.00
79_P 99_D 2.561 1.00
31_A 138_S 2.453 1.00
80_H 148_L 2.439 1.00
71_S 107_T 2.439 1.00
113_A 132_A 2.404 1.00
153_G 157_G 2.381 1.00
24_I 141_Y 2.274 1.00
75_G 104_D 2.255 1.00
66_V 160_G 2.109 1.00
74_M 78_F 2.093 1.00
101_F 152_G 2.044 1.00
114_L 158_M 2.036 1.00
71_S 104_D 1.932 1.00
110_F 132_A 1.838 1.00
10_F 140_V 1.821 1.00
106_G 136_A 1.803 1.00
109_I 135_I 1.726 1.00
67_S 107_T 1.712 1.00
33_D 131_L 1.691 1.00
67_S 111_T 1.686 1.00
30_I 134_V 1.678 1.00
27_A 137_W 1.658 1.00
105_H 145_H 1.65 1.00
10_F 147_P 1.644 1.00
6_N 148_L 1.58 1.00
30_I 135_I 1.525 1.00
106_G 110_F 1.498 1.00
117_L 125_G 1.495 1.00
106_G 153_G 1.491 1.00
136_A 150_M 1.429 1.00
160_G 164_A 1.362 0.99
9_L 12_L 1.358 0.99
114_L 157_G 1.317 0.99
82_R 145_H 1.314 0.99
10_F 14_N 1.311 0.99
27_A 138_S 1.311 0.99
103_S 145_H 1.31 0.99
78_F 101_F 1.309 0.99
24_I 27_A 1.307 0.99
118_C 165_Q 1.304 0.99
156_A 160_G 1.298 0.99
30_I 138_S 1.297 0.99
110_F 136_A 1.283 0.99
157_G 161_C 1.275 0.99
20_A 23_M 1.229 0.98
139_R 145_H 1.206 0.98
64_L 68_L 1.159 0.97
106_G 150_M 1.158 0.97
70_V 156_A 1.151 0.97
25_S 28_I 1.142 0.97
137_W 141_Y 1.136 0.97
22_W 26_L 1.131 0.97
106_G 109_I 1.12 0.96
82_R 139_R 1.118 0.96
82_R 105_H 1.105 0.96
126_S 130_V 1.102 0.96
80_H 146_W 1.092 0.96
9_L 147_P 1.081 0.95
158_M 162_L 1.078 0.95
136_A 140_V 1.075 0.95
107_T 153_G 1.073 0.95
100_S 105_H 1.07 0.95
84_F 95_H 1.057 0.95
10_F 148_L 1.052 0.95
24_I 28_I 1.035 0.94
106_G 154_L 1.03 0.94
10_F 142_L 1.027 0.94
75_G 138_S 1.027 0.94
31_A 75_G 1.022 0.93
114_L 118_C 1.021 0.93
14_N 17_P 1.015 0.93
84_F 146_W 1.013 0.93
64_L 108_V 1.012 0.93
63_A 161_C 1.009 0.93
31_A 142_L 1.009 0.93
138_S 142_L 1.009 0.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
1d2tA10.914199.90.513Contact Map0.663
1qi9A20.984899.80.538Contact Map0.408
1up8A40.949599.80.547Contact Map0.369
2ipbA40.964699.80.552Contact Map0.691
3bb0A10.984899.70.605Contact Map0.467
2lomA10.38381.40.962Contact Map0.07
2kluA10.25251.10.964Contact Map0
1u5lA10.23231.10.965Contact Map0.001
2lmzA10.136410.966Contact Map
1jmqA10.08080.90.966Contact Map
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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