OPENSEQ.org - CITD - ECOLI GREMLIN

May 4, 2021 - We are working on upgrading the webserver, some pages may not work.

CITD - Citrate lyase acyl carrier protein

UniProt:	P69330	Sequence MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDAIRTTILDVLARYNVRGVQLNVDDKGALDCILRARLEALLARASGIPALPWEDCQ	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG13543
Length:	98 (97)
Sequences:	211
Seq/Len:	2.18

CITD
Paralog alert: 0.17 [within 20: 0.00] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
17_V	65_V	3.909	1.00
49_I	65_V	2.984	1.00
53_L	63_L	2.254	1.00
48_T	52_V	2.2	1.00
17_V	75_L	2.154	1.00
17_V	49_I	2.109	0.99
31_L	50_L	2.042	0.99
33_I	61_V	1.641	0.96
38_E	46_R	1.524	0.93
20_R	66_D	1.505	0.92
30_D	62_Q	1.5	0.92
21_I	56_Y	1.49	0.92
93_P	97_C	1.452	0.91
29_I	61_V	1.447	0.90
33_I	75_L	1.44	0.90
31_L	55_R	1.429	0.90
92_L	97_C	1.423	0.89
46_R	50_L	1.42	0.89
21_I	63_L	1.398	0.88
56_Y	83_L	1.387	0.88
80_E	97_C	1.293	0.82
44_A	48_T	1.284	0.82
5_Q	88_G	1.272	0.81
46_R	59_R	1.193	0.75
41_F	94_W	1.163	0.72
12_L	18_M	1.149	0.71
14_S	71_L	1.138	0.70
6_P	22_A	1.133	0.69
33_I	49_I	1.112	0.67
44_A	76_R	1.105	0.66
18_M	66_D	1.101	0.66
39_K	86_A	1.1	0.66
56_Y	79_L	1.095	0.65
79_L	83_L	1.084	0.64
12_L	31_L	1.078	0.63
76_R	79_L	1.078	0.63
42_G	73_C	1.077	0.63
72_D	75_L	1.051	0.61
53_L	83_L	1.046	0.60
74_I	96_D	1.043	0.60
11_T	37_V	1.036	0.59
48_T	68_K	1.019	0.57
44_A	52_V	1.004	0.55
80_E	84_A	1.003	0.55
3_I	12_L	1.002	0.55
35_S	42_G	1.001	0.55

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
3j25A	1	1	9.6	0.935	Contact Map	0.156
3hs8A	1	0.5306	9.1	0.936	Contact Map	0.434
2jvfA	1	0.8469	8.9	0.936	Contact Map	0.27
2k6lA	2	0.449	6.3	0.94	Contact Map	0.137
3ffvA	2	0.5714	5.1	0.943	Contact Map	0.102
3e1sA	1	0.898	4.8	0.944	Contact Map	0.232
3od1A	2	0.9286	4.8	0.944	Contact Map	0.149
2dm9A	2	0.898	4.4	0.945	Contact Map	0.124
3n75A	5	0.9694	4.3	0.945	Contact Map	0.124
1usyA	3	0.9286	4.3	0.945	Contact Map	0.249

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0065 seconds.