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OPENSEQ.org
YQHA - UPF0114 protein YqhA
UniProt: P67244 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13011
Length: 164 (163)
Sequences: 237
Seq/Len: 1.45
YQHA
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
37_E 40_H 2.751 1.00
137_M 141_I 2.72 1.00
123_R 127_D 2.098 0.99
110_A 150_A 1.635 0.91
117_S 143_H 1.59 0.89
140_V 153_M 1.53 0.87
9_M 28_V 1.526 0.87
117_S 149_S 1.522 0.87
33_K 36_Q 1.481 0.85
57_L 70_L 1.478 0.84
65_L 76_S 1.453 0.83
70_L 100_M 1.384 0.79
127_D 152_V 1.373 0.78
110_A 118_S 1.354 0.76
103_T 156_L 1.35 0.76
10_Y 94_L 1.346 0.76
143_H 149_S 1.331 0.75
65_L 109_V 1.323 0.74
83_S 117_S 1.315 0.73
41_V 70_L 1.307 0.73
45_I 89_E 1.29 0.71
32_L 46_F 1.285 0.71
8_A 11_A 1.273 0.70
5_L 21_F 1.26 0.69
97_L 150_A 1.255 0.68
138_W 141_I 1.254 0.68
61_V 103_T 1.242 0.67
55_L 101_D 1.223 0.65
84_Q 97_L 1.209 0.64
80_N 112_S 1.198 0.63
73_V 153_M 1.196 0.63
68_G 100_M 1.193 0.63
15_L 28_V 1.192 0.63
37_E 123_R 1.184 0.62
22_G 34_F 1.183 0.62
27_L 101_D 1.182 0.62
20_Y 77_G 1.179 0.61
73_V 120_H 1.179 0.61
5_L 9_M 1.169 0.60
73_V 101_D 1.155 0.59
83_S 143_H 1.155 0.59
60_L 137_M 1.145 0.58
133_D 159_L 1.14 0.57
88_S 152_V 1.14 0.57
67_G 126_M 1.136 0.57
54_I 126_M 1.125 0.56
40_H 50_E 1.122 0.56
28_V 42_L 1.115 0.55
55_L 73_V 1.098 0.53
105_L 157_D 1.097 0.53
87_I 115_A 1.096 0.53
82_V 92_E 1.092 0.53
15_L 70_L 1.091 0.52
84_Q 92_E 1.09 0.52
83_S 119_I 1.089 0.52
48_M 53_L 1.085 0.52
118_S 150_A 1.082 0.52
75_F 97_L 1.082 0.52
25_L 28_V 1.081 0.51
78_Y 138_W 1.077 0.51
83_S 92_E 1.075 0.51
72_M 118_S 1.074 0.51
51_S 144_L 1.069 0.50
42_L 84_Q 1.067 0.50
79_E 113_I 1.065 0.50
103_T 129_K 1.064 0.50
147_V 152_V 1.063 0.50
148_L 152_V 1.063 0.50
83_S 149_S 1.062 0.49
15_L 136_L 1.057 0.49
49_A 52_D 1.051 0.48
31_A 159_L 1.051 0.48
76_S 99_K 1.05 0.48
140_V 145_T 1.049 0.48
97_L 110_A 1.049 0.48
40_H 142_I 1.047 0.48
61_V 119_I 1.044 0.48
71_V 74_M 1.043 0.48
21_F 38_I 1.04 0.47
27_L 73_V 1.04 0.47
70_L 140_V 1.04 0.47
6_E 17_A 1.04 0.47
55_L 72_M 1.034 0.47
38_I 45_I 1.027 0.46
72_M 102_A 1.019 0.45
21_F 160_T 1.016 0.45
113_I 136_L 1.016 0.45
48_M 51_S 1.013 0.44
93_K 156_L 1.01 0.44
152_V 158_R 1.01 0.44
3_R 162_H 1.01 0.44
10_Y 18_P 1.009 0.44
26_A 45_I 1.009 0.44
76_S 80_N 1 0.43
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3ixzA10.51223.10.97Contact Map0.029
3ar4A10.45122.70.971Contact Map0.281
1ifpA10.1222.20.972Contact Map0.371
2zxeA10.49392.10.973Contact Map0.06
1uqrA120.32931.80.974Contact Map0.221
2uygA120.30491.50.975Contact Map0.229
1cmkI10.13411.50.975Contact Map0
3arcX20.23781.30.976Contact Map0.083
4kjrA20.85980.90.978Contact Map0.206
4il3A20.95730.90.978Contact Map0.191
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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