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OPENSEQ.org

YDJM - Inner membrane protein YdjM
UniProt: P64481 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13989
Length: 196 (166)
Sequences: 210
Seq/Len: 1.27

YDJM
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
114_I 124_V 3.278 1.00
13_C 115_L 2.429 0.99
78_L 111_L 1.979 0.97
7_L 10_S 1.786 0.94
80_A 110_Y 1.693 0.91
127_L 133_R 1.656 0.90
41_T 106_M 1.635 0.89
28_Q 176_S 1.629 0.89
9_F 116_A 1.627 0.89
55_G 69_F 1.588 0.87
145_N 155_L 1.581 0.87
24_P 93_P 1.502 0.83
69_F 77_S 1.48 0.81
82_F 124_V 1.475 0.81
55_G 70_G 1.467 0.81
116_A 120_T 1.458 0.80
151_I 154_A 1.442 0.79
10_S 13_C 1.433 0.78
37_S 102_A 1.413 0.77
11_I 35_V 1.39 0.75
65_I 108_L 1.381 0.75
17_A 36_P 1.361 0.73
58_L 115_L 1.354 0.73
55_G 62_S 1.352 0.73
44_L 108_L 1.35 0.72
48_D 116_A 1.34 0.72
124_V 154_A 1.289 0.67
5_G 128_W 1.273 0.66
145_N 148_E 1.272 0.66
163_P 178_M 1.253 0.64
136_L 139_L 1.251 0.64
162_M 176_S 1.229 0.62
48_D 110_Y 1.227 0.62
77_S 81_V 1.225 0.62
104_Q 108_L 1.217 0.61
8_L 152_C 1.214 0.61
156_F 176_S 1.213 0.60
52_S 55_G 1.212 0.60
41_T 47_I 1.211 0.60
157_V 177_Q 1.199 0.59
28_Q 35_V 1.199 0.59
82_F 160_V 1.197 0.59
49_H 128_W 1.196 0.59
12_A 96_W 1.189 0.58
116_A 125_P 1.188 0.58
3_A 10_S 1.184 0.58
41_T 90_L 1.181 0.57
114_I 126_L 1.166 0.56
55_G 66_A 1.165 0.56
41_T 114_I 1.164 0.56
65_I 124_V 1.158 0.55
62_S 70_G 1.149 0.54
28_Q 178_M 1.145 0.54
16_F 42_C 1.143 0.54
79_L 144_G 1.133 0.53
73_G 124_V 1.125 0.52
87_T 151_I 1.123 0.52
14_A 37_S 1.118 0.51
154_A 177_Q 1.11 0.50
56_Q 137_P 1.096 0.49
115_L 127_L 1.095 0.49
35_V 81_V 1.093 0.49
81_V 105_G 1.092 0.49
148_E 155_L 1.085 0.48
10_S 29_G 1.081 0.48
79_L 157_V 1.074 0.47
49_H 121_P 1.072 0.47
87_T 155_L 1.061 0.46
12_A 106_M 1.058 0.45
7_L 61_I 1.056 0.45
2_T 49_H 1.053 0.45
84_L 142_Q 1.053 0.45
38_A 59_K 1.046 0.44
59_K 62_S 1.046 0.44
42_C 53_F 1.046 0.44
28_Q 177_Q 1.046 0.44
29_G 61_I 1.033 0.43
112_S 116_A 1.027 0.42
14_A 106_M 1.026 0.42
29_G 33_H 1.024 0.42
162_M 177_Q 1.02 0.42
73_G 110_Y 1.018 0.41
79_L 127_L 1.015 0.41
22_L 61_I 1.012 0.41
108_L 163_P 1.011 0.41
85_L 138_I 1.009 0.41
114_I 163_P 1.003 0.40
36_P 40_L 1.001 0.40
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
4ednK70.11222.80.967Contact Map0.029
1gp7A30.26021.20.974Contact Map
2b6nA10.30611.10.974Contact Map0.2
3idwA10.251.10.974Contact Map0.119
1dowB10.127610.975Contact Map
3am6A40.40310.90.976Contact Map0.03
1ty4C20.09690.80.976Contact Map
3nd0A20.3520.70.977Contact Map0.267
1oefA10.12240.70.977Contact Map
2rddB10.18880.70.978Contact Map0.115

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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