| UniProt: | P60723 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10867 | ||
| Length: | 201 (192) | ||
| Sequences: | 1779 | ||
| Seq/Len: | 9.27 |
| RL4
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 45_A | 88_R | 3.556 | 1.00 | |
| 60_W | 78_W | 3.301 | 1.00 | |
| 70_S | 77_I | 3.184 | 1.00 | |
| 45_A | 51_E | 3.156 | 1.00 | |
| 28_V | 108_I | 2.88 | 1.00 | |
| 134_L | 161_A | 2.547 | 1.00 | |
| 190_A | 194_K | 2.467 | 1.00 | |
| 55_S | 59_P | 2.178 | 1.00 | |
| 29_H | 33_V | 2.061 | 1.00 | |
| 51_E | 88_R | 2.029 | 1.00 | |
| 46_Q | 86_A | 1.956 | 1.00 | |
| 31_V | 96_V | 1.923 | 1.00 | |
| 60_W | 65_T | 1.88 | 1.00 | |
| 26_A | 30_Q | 1.872 | 1.00 | |
| 31_V | 104_A | 1.865 | 1.00 | |
| 133_L | 136_Q | 1.832 | 1.00 | |
| 34_A | 94_Q | 1.827 | 1.00 | |
| 70_S | 75_S | 1.79 | 1.00 | |
| 52_V | 82_G | 1.777 | 1.00 | |
| 45_A | 89_P | 1.767 | 1.00 | |
| 55_S | 73_I | 1.668 | 1.00 | |
| 117_R | 185_K | 1.663 | 1.00 | |
| 48_T | 51_E | 1.661 | 1.00 | |
| 159_L | 162_R | 1.643 | 1.00 | |
| 136_Q | 140_D | 1.643 | 1.00 | |
| 30_Q | 100_M | 1.609 | 1.00 | |
| 36_A | 178_V | 1.608 | 1.00 | |
| 27_L | 103_G | 1.591 | 1.00 | |
| 97_N | 100_M | 1.585 | 1.00 | |
| 128_A | 133_L | 1.551 | 1.00 | |
| 96_V | 100_M | 1.546 | 1.00 | |
| 54_G | 74_K | 1.543 | 1.00 | |
| 135_A | 139_K | 1.532 | 1.00 | |
| 27_L | 100_M | 1.515 | 1.00 | |
| 188_M | 196_V | 1.497 | 1.00 | |
| 28_V | 107_S | 1.474 | 1.00 | |
| 132_K | 136_Q | 1.472 | 1.00 | |
| 60_W | 67_R | 1.47 | 1.00 | |
| 34_A | 96_V | 1.465 | 1.00 | |
| 32_V | 181_I | 1.458 | 1.00 | |
| 129_P | 156_N | 1.453 | 1.00 | |
| 35_Y | 96_V | 1.431 | 0.99 | |
| 56_G | 74_K | 1.428 | 0.99 | |
| 30_Q | 94_Q | 1.424 | 0.99 | |
| 70_S | 78_W | 1.42 | 0.99 | |
| 44_R | 92_H | 1.417 | 0.99 | |
| 151_G | 191_D | 1.408 | 0.99 | |
| 77_I | 84_T | 1.379 | 0.99 | |
| 119_I | 185_K | 1.374 | 0.99 | |
| 35_Y | 39_A | 1.374 | 0.99 | |
| 24_N | 27_L | 1.367 | 0.99 | |
| 35_Y | 179_S | 1.359 | 0.99 | |
| 60_W | 70_S | 1.332 | 0.99 | |
| 28_V | 181_I | 1.292 | 0.99 | |
| 55_S | 74_K | 1.292 | 0.99 | |
| 59_P | 78_W | 1.286 | 0.99 | |
| 125_S | 154_D | 1.283 | 0.99 | |
| 175_I | 196_V | 1.283 | 0.99 | |
| 35_Y | 176_D | 1.269 | 0.98 | |
| 134_L | 148_I | 1.246 | 0.98 | |
| 59_P | 70_S | 1.243 | 0.98 | |
| 15_S | 197_E | 1.228 | 0.98 | |
| 122_E | 190_A | 1.226 | 0.98 | |
| 134_L | 137_K | 1.217 | 0.98 | |
| 126_V | 137_K | 1.198 | 0.98 | |
| 129_P | 160_A | 1.183 | 0.97 | |
| 136_Q | 139_K | 1.173 | 0.97 | |
| 191_D | 194_K | 1.167 | 0.97 | |
| 40_R | 92_H | 1.163 | 0.97 | |
| 56_G | 59_P | 1.16 | 0.97 | |
| 135_A | 164_L | 1.153 | 0.97 | |
| 101_Y | 177_P | 1.152 | 0.97 | |
| 75_S | 78_W | 1.148 | 0.97 | |
| 16_E | 20_G | 1.133 | 0.96 | |
| 113_V | 118_L | 1.132 | 0.96 | |
| 194_K | 197_E | 1.131 | 0.96 | |
| 33_V | 36_A | 1.129 | 0.96 | |
| 173_T | 195_Q | 1.114 | 0.96 | |
| 129_P | 159_L | 1.112 | 0.96 | |
| 36_A | 39_A | 1.109 | 0.96 | |
| 188_M | 193_V | 1.108 | 0.96 | |
| 172_A | 195_Q | 1.09 | 0.95 | |
| 60_W | 77_I | 1.086 | 0.95 | |
| 194_K | 198_E | 1.078 | 0.95 | |
| 156_N | 159_L | 1.071 | 0.94 | |
| 37_A | 93_S | 1.07 | 0.94 | |
| 110_S | 114_R | 1.068 | 0.94 | |
| 121_V | 124_F | 1.068 | 0.94 | |
| 21_R | 103_G | 1.052 | 0.94 | |
| 55_S | 72_S | 1.051 | 0.94 | |
| 161_A | 169_V | 1.047 | 0.94 | |
| 38_G | 93_S | 1.045 | 0.93 | |
| 168_D | 183_F | 1.04 | 0.93 | |
| 59_P | 72_S | 1.035 | 0.93 | |
| 55_S | 78_W | 1.023 | 0.92 | |
| 54_G | 73_I | 1.007 | 0.92 | |
| 44_R | 86_A | 1.006 | 0.92 | |
| 56_G | 72_S | 1.005 | 0.92 | |
| 35_Y | 177_P | 1.004 | 0.92 | |
| 57_K | 73_I | 1.002 | 0.91 | |
| 34_A | 38_G | 1.001 | 0.91 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4kixE | 1 | 0.995 | 100 | 0.05 | Contact Map | 0.598 |
| 3j3wE | 1 | 1 | 100 | 0.059 | Contact Map | 0.448 |
| 1dmgA | 1 | 1 | 100 | 0.069 | Contact Map | 0.737 |
| 3bboG | 1 | 0.99 | 100 | 0.095 | Contact Map | 0.364 |
| 3v2dF | 1 | 0.9652 | 100 | 0.104 | Contact Map | 0.629 |
| 2zjrC | 1 | 0.9602 | 100 | 0.11 | Contact Map | 0.435 |
| 2ftcD | 1 | 0.8458 | 100 | 0.154 | Contact Map | 0.014 |
| 3j39C | 1 | 0.99 | 100 | 0.18 | Contact Map | 0.436 |
| 4bynC | 1 | 0.9851 | 100 | 0.189 | Contact Map | 0.429 |
| 4a17C | 1 | 0.9801 | 100 | 0.203 | Contact Map | 0.429 |
Sequence Conservation (Image Generated using WebLogo v3)