| UniProt: | P60438 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10866 | ||
| Length: | 209 (208) | ||
| Sequences: | 1738 | ||
| Seq/Len: | 8.36 |
| RL3
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 164_Q | 167_N | 4.856 | 1.00 | |
| 27_I | 189_V | 3.981 | 1.00 | |
| 6_G | 27_I | 3.434 | 1.00 | |
| 113_S | 170_V | 3.408 | 1.00 | |
| 91_T | 94_Q | 3.394 | 1.00 | |
| 110_T | 169_R | 3.135 | 1.00 | |
| 119_A | 165_M | 2.947 | 1.00 | |
| 130_Q | 136_N | 2.641 | 1.00 | |
| 35_T | 79_L | 2.61 | 1.00 | |
| 56_K | 59_R | 2.602 | 1.00 | |
| 27_I | 193_V | 2.438 | 1.00 | |
| 122_V | 129_T | 2.41 | 1.00 | |
| 150_Q | 153_G | 2.3 | 1.00 | |
| 40_L | 46_R | 2.295 | 1.00 | |
| 65_A | 69_A | 2.262 | 1.00 | |
| 36_Q | 67_H | 2.247 | 1.00 | |
| 193_V | 201_L | 2.148 | 1.00 | |
| 129_T | 132_A | 2.143 | 1.00 | |
| 187_L | 203_V | 2.115 | 1.00 | |
| 116_K | 165_M | 2.103 | 1.00 | |
| 112_T | 169_R | 2.055 | 1.00 | |
| 121_T | 143_P | 2.014 | 1.00 | |
| 106_K | 176_D | 1.974 | 1.00 | |
| 154_K | 157_K | 1.967 | 1.00 | |
| 139_S | 142_V | 1.966 | 1.00 | |
| 149_N | 153_G | 1.945 | 1.00 | |
| 103_D | 179_R | 1.873 | 1.00 | |
| 176_D | 190_K | 1.866 | 1.00 | |
| 49_Q | 67_H | 1.862 | 1.00 | |
| 7_K | 28_E | 1.846 | 1.00 | |
| 136_N | 139_S | 1.833 | 1.00 | |
| 26_V | 188_L | 1.812 | 1.00 | |
| 109_V | 203_V | 1.796 | 1.00 | |
| 181_D | 184_R | 1.671 | 1.00 | |
| 86_E | 89_E | 1.66 | 1.00 | |
| 16_T | 20_V | 1.655 | 1.00 | |
| 118_F | 162_A | 1.617 | 1.00 | |
| 54_A | 74_E | 1.595 | 1.00 | |
| 173_Q | 208_K | 1.587 | 1.00 | |
| 146_I | 155_V | 1.583 | 1.00 | |
| 126_N | 165_M | 1.543 | 1.00 | |
| 130_Q | 139_S | 1.502 | 1.00 | |
| 169_R | 202_I | 1.464 | 0.99 | |
| 107_V | 203_V | 1.456 | 0.99 | |
| 196_A | 199_S | 1.45 | 0.99 | |
| 136_N | 142_V | 1.446 | 0.99 | |
| 12_T | 26_V | 1.43 | 0.99 | |
| 4_L | 29_V | 1.426 | 0.99 | |
| 130_Q | 142_V | 1.415 | 0.99 | |
| 60_V | 68_F | 1.395 | 0.99 | |
| 14_I | 188_L | 1.393 | 0.99 | |
| 4_L | 96_I | 1.391 | 0.99 | |
| 37_V | 92_V | 1.381 | 0.99 | |
| 61_T | 64_E | 1.378 | 0.99 | |
| 78_G | 200_D | 1.377 | 0.99 | |
| 13_R | 21_S | 1.376 | 0.99 | |
| 110_T | 204_K | 1.376 | 0.99 | |
| 127_F | 160_K | 1.372 | 0.99 | |
| 121_T | 162_A | 1.265 | 0.98 | |
| 31_A | 185_N | 1.238 | 0.98 | |
| 55_K | 60_V | 1.236 | 0.98 | |
| 108_D | 173_Q | 1.235 | 0.98 | |
| 111_G | 194_P | 1.235 | 0.98 | |
| 90_F | 94_Q | 1.206 | 0.97 | |
| 99_E | 182_A | 1.2 | 0.97 | |
| 54_A | 76_G | 1.184 | 0.97 | |
| 102_A | 105_K | 1.183 | 0.97 | |
| 172_V | 175_L | 1.18 | 0.97 | |
| 119_A | 123_K | 1.164 | 0.96 | |
| 125_W | 162_A | 1.162 | 0.96 | |
| 16_T | 176_D | 1.157 | 0.96 | |
| 30_E | 52_T | 1.153 | 0.96 | |
| 173_Q | 204_K | 1.142 | 0.96 | |
| 174_S | 206_A | 1.124 | 0.95 | |
| 64_E | 67_H | 1.119 | 0.95 | |
| 5_V | 78_G | 1.107 | 0.95 | |
| 28_E | 185_N | 1.102 | 0.94 | |
| 48_I | 90_F | 1.102 | 0.94 | |
| 50_V | 96_I | 1.085 | 0.94 | |
| 124_R | 163_G | 1.08 | 0.94 | |
| 57_A | 65_A | 1.077 | 0.94 | |
| 80_W | 202_I | 1.072 | 0.93 | |
| 116_K | 119_A | 1.06 | 0.93 | |
| 114_K | 196_A | 1.057 | 0.93 | |
| 143_P | 146_I | 1.056 | 0.93 | |
| 68_F | 73_V | 1.049 | 0.92 | |
| 172_V | 192_A | 1.045 | 0.92 | |
| 123_K | 165_M | 1.043 | 0.92 | |
| 111_G | 199_S | 1.034 | 0.92 | |
| 64_E | 68_F | 1.027 | 0.91 | |
| 37_V | 91_T | 1.025 | 0.91 | |
| 113_S | 168_E | 1.022 | 0.91 | |
| 111_G | 201_L | 1.021 | 0.91 | |
| 36_Q | 43_D | 1.018 | 0.91 | |
| 132_A | 140_H | 1.015 | 0.91 | |
| 50_V | 82_F | 1.009 | 0.90 | |
| 146_I | 161_M | 1.004 | 0.90 | |
| 143_P | 161_M | 1.003 | 0.90 | |
| 189_V | 193_V | 1.001 | 0.90 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4kixD | 1 | 1 | 100 | -0.007 | Contact Map | 0.701 |
| 3bboF | 1 | 0.9952 | 100 | 0.003 | Contact Map | 0.454 |
| 3j3wD | 1 | 0.9904 | 100 | 0.008 | Contact Map | 0.633 |
| 2ftcC | 1 | 0.9952 | 100 | 0.016 | Contact Map | 0.036 |
| 3v2dE | 1 | 0.9761 | 100 | 0.021 | Contact Map | 0.741 |
| 2zjrB | 1 | 0.9761 | 100 | 0.021 | Contact Map | 0.71 |
| 1vq8B | 1 | 0.9952 | 100 | 0.109 | Contact Map | 0.618 |
| 3j21C | 1 | 0.9856 | 100 | 0.152 | Contact Map | 0.633 |
| 3iz5C | 1 | 0.9809 | 100 | 0.169 | Contact Map | 0.592 |
| 3zf7f | 1 | 0.9761 | 100 | 0.171 | Contact Map | 0.579 |
Sequence Conservation (Image Generated using WebLogo v3)