| UniProt: | P52060 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12981 | ||
| Length: | 96 (95) | ||
| Sequences: | 550 | ||
| Seq/Len: | 5.79 |
| YGGU
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 17_I | 51_L | 3.002 | 1.00 | |
| 24_D | 39_T | 2.914 | 1.00 | |
| 56_G | 66_V | 1.938 | 1.00 | |
| 61_V | 81_I | 1.848 | 1.00 | |
| 70_K | 78_Q | 1.846 | 1.00 | |
| 33_E | 76_H | 1.808 | 1.00 | |
| 20_K | 46_Q | 1.757 | 1.00 | |
| 38_I | 51_L | 1.731 | 1.00 | |
| 52_V | 68_I | 1.729 | 1.00 | |
| 43_V | 46_Q | 1.696 | 1.00 | |
| 19_P | 75_R | 1.672 | 1.00 | |
| 7_N | 10_G | 1.626 | 0.99 | |
| 55_L | 79_I | 1.605 | 0.99 | |
| 39_T | 50_H | 1.604 | 0.99 | |
| 55_L | 66_V | 1.556 | 0.99 | |
| 16_Y | 76_H | 1.477 | 0.99 | |
| 24_D | 50_H | 1.44 | 0.98 | |
| 68_I | 79_I | 1.431 | 0.98 | |
| 28_G | 35_K | 1.416 | 0.98 | |
| 67_V | 82_I | 1.41 | 0.98 | |
| 49_S | 53_K | 1.4 | 0.98 | |
| 10_G | 80_K | 1.394 | 0.98 | |
| 25_S | 37_A | 1.374 | 0.98 | |
| 36_V | 55_L | 1.367 | 0.98 | |
| 20_K | 42_P | 1.357 | 0.98 | |
| 14_R | 78_Q | 1.323 | 0.97 | |
| 90_E | 95_I | 1.305 | 0.97 | |
| 54_F | 58_Q | 1.291 | 0.96 | |
| 12_V | 80_K | 1.284 | 0.96 | |
| 52_V | 66_V | 1.276 | 0.96 | |
| 18_Q | 43_V | 1.246 | 0.95 | |
| 53_K | 63_K | 1.224 | 0.95 | |
| 36_V | 51_L | 1.203 | 0.94 | |
| 18_Q | 35_K | 1.203 | 0.94 | |
| 36_V | 54_F | 1.198 | 0.94 | |
| 49_S | 52_V | 1.179 | 0.93 | |
| 21_A | 24_D | 1.17 | 0.93 | |
| 69_E | 78_Q | 1.157 | 0.92 | |
| 41_P | 44_D | 1.154 | 0.92 | |
| 26_I | 36_V | 1.154 | 0.92 | |
| 89_P | 93_A | 1.136 | 0.91 | |
| 89_P | 92_A | 1.113 | 0.90 | |
| 27_V | 37_A | 1.109 | 0.90 | |
| 48_N | 51_L | 1.078 | 0.88 | |
| 90_E | 94_L | 1.065 | 0.87 | |
| 15_L | 36_V | 1.02 | 0.84 | |
| 38_I | 54_F | 1.011 | 0.84 | |
| 18_Q | 41_P | 1.008 | 0.83 | |
| 28_G | 75_R | 1.003 | 0.83 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1n91A | 1 | 1 | 100 | 0.082 | Contact Map | 0.564 |
| 1jrmA | 1 | 0.9479 | 99.9 | 0.174 | Contact Map | 0.47 |
| 3nvzC | 2 | 1 | 28.3 | 0.895 | Contact Map | 0.573 |
| 2w3sB | 4 | 1 | 22.4 | 0.9 | Contact Map | 0.579 |
| 1t6aA | 1 | 0.7708 | 17.3 | 0.905 | Contact Map | 0.487 |
| 3zyvA | 4 | 0.9896 | 16.7 | 0.906 | Contact Map | 0.618 |
| 3uncA | 2 | 1 | 16.1 | 0.907 | Contact Map | 0.583 |
| 1t3qB | 2 | 1 | 15.8 | 0.907 | Contact Map | 0.547 |
| 1rm6A | 2 | 0.9688 | 14.7 | 0.909 | Contact Map | 0.504 |
| 1ffvB | 2 | 0.9792 | 11.7 | 0.912 | Contact Map | 0.526 |
Sequence Conservation (Image Generated using WebLogo v3)