| UniProt: | P45736 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12653 | ||
| Length: | 117 (111) | ||
| Sequences: | 516 | ||
| Seq/Len: | 4.65 |
| YCJD
Paralog alert: 0.18 [within 20: 0.01] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 77_T | 81_E | 4.022 | 1.00 | |
| 51_A | 85_W | 3.648 | 1.00 | |
| 19_Q | 96_D | 3.034 | 1.00 | |
| 58_V | 85_W | 2.957 | 1.00 | |
| 98_N | 101_T | 2.506 | 1.00 | |
| 9_A | 42_P | 2.501 | 1.00 | |
| 44_G | 79_W | 2.386 | 1.00 | |
| 65_Q | 91_W | 2.238 | 1.00 | |
| 43_V | 48_L | 2.232 | 1.00 | |
| 35_F | 110_L | 2.214 | 1.00 | |
| 26_Y | 99_E | 2.188 | 1.00 | |
| 38_R | 41_H | 2.172 | 1.00 | |
| 53_C | 85_W | 2.145 | 1.00 | |
| 23_L | 27_L | 2.051 | 1.00 | |
| 61_L | 95_I | 2.027 | 1.00 | |
| 90_F | 105_N | 2.006 | 1.00 | |
| 48_L | 58_V | 1.919 | 1.00 | |
| 94_E | 98_N | 1.912 | 1.00 | |
| 12_L | 16_L | 1.72 | 0.99 | |
| 77_T | 87_V | 1.655 | 0.99 | |
| 88_L | 106_I | 1.565 | 0.99 | |
| 79_W | 83_Q | 1.538 | 0.99 | |
| 55_A | 110_L | 1.512 | 0.98 | |
| 48_L | 80_L | 1.489 | 0.98 | |
| 38_R | 53_C | 1.452 | 0.98 | |
| 23_L | 61_L | 1.447 | 0.98 | |
| 19_Q | 92_N | 1.444 | 0.98 | |
| 46_Y | 79_W | 1.379 | 0.97 | |
| 30_R | 36_K | 1.376 | 0.97 | |
| 26_Y | 103_L | 1.344 | 0.96 | |
| 17_T | 47_I | 1.305 | 0.95 | |
| 35_F | 52_C | 1.298 | 0.95 | |
| 99_E | 103_L | 1.279 | 0.94 | |
| 78_S | 81_E | 1.27 | 0.94 | |
| 94_E | 105_N | 1.231 | 0.93 | |
| 74_S | 78_S | 1.169 | 0.90 | |
| 58_V | 87_V | 1.158 | 0.89 | |
| 36_K | 54_S | 1.148 | 0.89 | |
| 105_N | 108_Q | 1.098 | 0.85 | |
| 67_D | 91_W | 1.093 | 0.85 | |
| 77_T | 80_L | 1.074 | 0.84 | |
| 22_K | 96_D | 1.04 | 0.81 | |
| 5_I | 47_I | 1.031 | 0.80 | |
| 64_G | 91_W | 1.03 | 0.80 | |
| 17_T | 92_N | 1.026 | 0.80 | |
| 18_L | 96_D | 1.016 | 0.79 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1cw0A | 1 | 0.9658 | 100 | 0.424 | Contact Map | 0.579 |
| 3hrlA | 1 | 0.8889 | 99.9 | 0.471 | Contact Map | 0.848 |
| 1vsrA | 1 | 0.8462 | 99.9 | 0.476 | Contact Map | 0.533 |
| 3r3pA | 2 | 0.8547 | 99.9 | 0.541 | Contact Map | 0.511 |
| 2m20A | 2 | 0.2137 | 12 | 0.943 | Contact Map | 0 |
| 4m7cA | 2 | 0.5897 | 7.6 | 0.948 | Contact Map | 0.112 |
| 3d12B | 2 | 0.7521 | 6.2 | 0.95 | Contact Map | 0.12 |
| 3bu8A | 2 | 0.6068 | 5.6 | 0.951 | Contact Map | 0.141 |
| 1ikoP | 1 | 0.7607 | 5 | 0.952 | Contact Map | 0.073 |
| 1vffA | 1 | 0.7863 | 3.9 | 0.954 | Contact Map | 0.174 |
Sequence Conservation (Image Generated using WebLogo v3)