| UniProt: | P42589 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12719 | ||
| Length: | 110 (108) | ||
| Sequences: | 1797 | ||
| Seq/Len: | 16.64 |
| YGJH
Paralog alert: 0.30 [within 20: 0.01] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 21_E | 35_Q | 3.505 | 1.00 | |
| 18_K | 62_T | 2.989 | 1.00 | |
| 24_R | 50_V | 2.861 | 1.00 | |
| 54_S | 57_E | 2.651 | 1.00 | |
| 18_K | 105_A | 2.533 | 1.00 | |
| 8_D | 11_R | 2.411 | 1.00 | |
| 14_M | 64_V | 2.312 | 1.00 | |
| 28_A | 75_R | 2.26 | 1.00 | |
| 23_K | 33_I | 2.23 | 1.00 | |
| 5_A | 8_D | 2.096 | 1.00 | |
| 20_V | 42_T | 1.993 | 1.00 | |
| 21_E | 59_M | 1.98 | 1.00 | |
| 45_T | 81_C | 1.933 | 1.00 | |
| 61_K | 98_T | 1.889 | 1.00 | |
| 38_V | 65_V | 1.877 | 1.00 | |
| 4_V | 12_L | 1.821 | 1.00 | |
| 46_V | 77_E | 1.796 | 1.00 | |
| 45_T | 65_V | 1.778 | 1.00 | |
| 17_G | 36_V | 1.775 | 1.00 | |
| 35_Q | 44_Q | 1.768 | 1.00 | |
| 25_H | 33_I | 1.765 | 1.00 | |
| 44_Q | 77_E | 1.668 | 1.00 | |
| 46_V | 74_M | 1.665 | 1.00 | |
| 35_Q | 42_T | 1.656 | 1.00 | |
| 32_Y | 55_E | 1.542 | 1.00 | |
| 6_Y | 10_A | 1.482 | 1.00 | |
| 64_V | 97_L | 1.459 | 1.00 | |
| 12_L | 66_L | 1.456 | 1.00 | |
| 19_I | 63_V | 1.447 | 1.00 | |
| 7_A | 10_A | 1.401 | 0.99 | |
| 17_G | 65_V | 1.378 | 0.99 | |
| 3_T | 70_Q | 1.363 | 0.99 | |
| 29_D | 75_R | 1.319 | 0.99 | |
| 62_T | 102_M | 1.314 | 0.99 | |
| 34_V | 85_C | 1.298 | 0.99 | |
| 22_V | 55_E | 1.292 | 0.99 | |
| 13_E | 108_R | 1.244 | 0.98 | |
| 73_K | 78_T | 1.217 | 0.98 | |
| 33_I | 44_Q | 1.209 | 0.98 | |
| 24_R | 55_E | 1.204 | 0.98 | |
| 88_T | 92_S | 1.178 | 0.98 | |
| 22_V | 32_Y | 1.177 | 0.98 | |
| 15_R | 67_C | 1.172 | 0.98 | |
| 37_D | 105_A | 1.169 | 0.97 | |
| 33_I | 77_E | 1.129 | 0.97 | |
| 38_V | 67_C | 1.114 | 0.96 | |
| 86_A | 109_V | 1.113 | 0.96 | |
| 34_V | 83_L | 1.107 | 0.96 | |
| 97_L | 109_V | 1.08 | 0.95 | |
| 29_D | 51_P | 1.056 | 0.95 | |
| 53_Y | 58_L | 1.034 | 0.94 | |
| 36_V | 81_C | 1.018 | 0.93 | |
| 13_E | 67_C | 1.009 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1pxfA | 1 | 1 | 100 | 0.149 | Contact Map | 0.686 |
| 2cwpA | 1 | 0.9909 | 100 | 0.151 | Contact Map | 0.834 |
| 1mkhA | 1 | 0.9727 | 100 | 0.174 | Contact Map | 0.756 |
| 1gd7A | 4 | 0.9727 | 100 | 0.183 | Contact Map | 0.808 |
| 3g48A | 2 | 0.9909 | 100 | 0.184 | Contact Map | 0.861 |
| 1pybA | 4 | 0.9818 | 100 | 0.184 | Contact Map | 0.752 |
| 2q2iA | 2 | 0.9909 | 100 | 0.186 | Contact Map | 0.844 |
| 2nzhA | 2 | 0.9909 | 100 | 0.187 | Contact Map | 0.852 |
| 2q2hA | 2 | 0.9909 | 100 | 0.195 | Contact Map | 0.847 |
| 1rqgA | 1 | 0.9818 | 100 | 0.203 | Contact Map |
Sequence Conservation (Image Generated using WebLogo v3)